ctfEnvelopFunction

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ctfEnvelopFunction is Eos's Command.


List of option

Main option

Option Essential/Optional Description Default
-o Optional Output: ASCII stdout
-Rmax Optional max Spatial frequency: [/A] 0.1
-dR Optional delta Spatial frequency: [/A] 0.0001
-kV Optional Acceleration voltage: [kV] 200
-Cs Optional Spherical aberration coefficient: [mm] 1.7
-df Essential Defocus: [A]:under(+) 100000
-A Optional AmplitudeContrast/PhaseContrast 0.0
-Ain Optional Illumination Aperture[mrad] 0.02
-ctfMode Optional CTFMode 32
-c Optional ConfigurationFile NULL
-m Optional Mode 0
-h Optional Help  

-m details

Value Description
0

CTFMode details

Value Description
32 with Illumination Aperture
64 with Energy Spread


Execution example

Case: Options only essential

Case: df=100000

0.000000e+00 1.000000e+00
1.000000e-04 9.999994e-01
2.000000e-04 9.999977e-01
3.000000e-04 9.999949e-01
4.000000e-04 9.999909e-01
5.000000e-04 9.999858e-01
6.000000e-04 9.999795e-01
7.000000e-04 9.999721e-01
8.000000e-04 9.999635e-01
9.000000e-04 9.999539e-01

...

9.900110e-02 5.728893e-01
9.910110e-02 5.722460e-01
9.920111e-02 5.716026e-01
9.930111e-02 5.709595e-01
9.940111e-02 5.703164e-01
9.950111e-02 5.696734e-01
9.960111e-02 5.690305e-01
9.970111e-02 5.683877e-01
9.980112e-02 5.677449e-01
9.990112e-02 5.671023e-01

Outdata-ctfEnvelopFunction.png
By gnuplot


Option -Rmax

Case: Rmax=0.003, df=100000

0.000000e+00 1.000000e+00
1.000000e-04 9.999994e-01
2.000000e-04 9.999977e-01
3.000000e-04 9.999949e-01
4.000000e-04 9.999909e-01
5.000000e-04 9.999858e-01
6.000000e-04 9.999795e-01
7.000000e-04 9.999721e-01
8.000000e-04 9.999635e-01
9.000000e-04 9.999539e-01
9.999999e-04 9.999430e-01
1.100000e-03 9.999311e-01
1.200000e-03 9.999180e-01
1.300000e-03 9.999037e-01
1.400000e-03 9.998884e-01
1.500000e-03 9.998719e-01
1.600000e-03 9.998542e-01
1.700000e-03 9.998354e-01
1.800000e-03 9.998155e-01
1.899999e-03 9.997944e-01
1.999999e-03 9.997722e-01
2.099999e-03 9.997489e-01
2.200000e-03 9.997244e-01
2.300000e-03 9.996988e-01
2.400000e-03 9.996720e-01
2.500000e-03 9.996441e-01
2.600000e-03 9.996151e-01
2.700000e-03 9.995849e-01
2.800000e-03 9.995536e-01
2.900000e-03 9.995211e-01

Outdata-Rmax-ctfEnvelopFunction.png
By gnuplot


Option -dR

Case: dR=0.0002, Rmax=0.003, df=100000

0.000000e+00 1.000000e+00
2.000000e-04 9.999977e-01
4.000000e-04 9.999909e-01
6.000000e-04 9.999795e-01
8.000000e-04 9.999635e-01
9.999999e-04 9.999430e-01
1.200000e-03 9.999180e-01
1.400000e-03 9.998884e-01
1.600000e-03 9.998542e-01
1.800000e-03 9.998155e-01
2.000000e-03 9.997722e-01
2.200000e-03 9.997244e-01
2.400000e-03 9.996720e-01
2.600000e-03 9.996151e-01
2.799999e-03 9.995536e-01
2.999999e-03 9.994875e-01

Outdata-dR-ctfEnvelopFunction.png
By gnuplot


Option -kV

Case: kV=1000, df=100000

0.000000e+00 1.000000e+00
1.000000e-04 9.999994e-01
2.000000e-04 9.999977e-01
3.000000e-04 9.999949e-01
4.000000e-04 9.999909e-01
5.000000e-04 9.999858e-01
6.000000e-04 9.999795e-01
7.000000e-04 9.999721e-01
8.000000e-04 9.999635e-01
9.000000e-04 9.999539e-01

...

9.900110e-02 5.723011e-01
9.910110e-02 5.716560e-01
9.920111e-02 5.710110e-01
9.930111e-02 5.703661e-01
9.940111e-02 5.697213e-01
9.950111e-02 5.690766e-01
9.960111e-02 5.684319e-01
9.970111e-02 5.677873e-01
9.980112e-02 5.671429e-01
9.990112e-02 5.664985e-01

Outdata-kV-ctfEnvelopFunction.png
By gnuplot


Option -Cs

Case: Cs=2.1, df=100000

0.000000e+00 1.000000e+00
1.000000e-04 9.999994e-01
2.000000e-04 9.999977e-01
3.000000e-04 9.999949e-01
4.000000e-04 9.999909e-01
5.000000e-04 9.999858e-01
6.000000e-04 9.999795e-01
7.000000e-04 9.999721e-01
8.000000e-04 9.999635e-01
9.000000e-04 9.999539e-01

...

9.900110e-02 5.730467e-01
9.910110e-02 5.724038e-01
9.920111e-02 5.717610e-01
9.930111e-02 5.711183e-01
9.940111e-02 5.704757e-01
9.950111e-02 5.698332e-01
9.960111e-02 5.691907e-01
9.970111e-02 5.685483e-01
9.980112e-02 5.679060e-01
9.990112e-02 5.672638e-01

Outdata-Cs-ctfEnvelopFunction.png
By gnuplot


Option -Ain

Case: Ain=0.1, df=100000

0.000000e+00 1.000000e+00
1.000000e-04 9.999858e-01
2.000000e-04 9.999430e-01
3.000000e-04 9.998719e-01
4.000000e-04 9.997722e-01
5.000000e-04 9.996441e-01
6.000000e-04 9.994875e-01
7.000000e-04 9.993026e-01
8.000000e-04 9.990891e-01
9.000000e-04 9.988473e-01

...

9.900110e-02 8.948820e-07
9.910110e-02 8.700968e-07
9.920111e-02 8.459706e-07
9.930111e-02 8.224916e-07
9.940111e-02 7.996417e-07
9.950111e-02 7.774053e-07
9.960111e-02 7.557654e-07
9.970111e-02 7.347090e-07
9.980112e-02 7.142174e-07
9.990112e-02 6.942782e-07

Outdata-Ain-ctfEnvelopFunction.png
By gnuplot


Option -ctfMode

Case: ctfMode=64, df=100000

0.000000e+00 1.000000e+00
1.000000e-04 1.000000e+00
2.000000e-04 1.000000e+00
3.000000e-04 1.000000e+00
4.000000e-04 1.000000e+00
5.000000e-04 1.000000e+00
6.000000e-04 1.000000e+00
7.000000e-04 1.000000e+00
8.000000e-04 1.000000e+00
9.000000e-04 1.000000e+00

...

9.900110e-02 1.000000e+00
9.910110e-02 1.000000e+00
9.920111e-02 1.000000e+00
9.930111e-02 1.000000e+00
9.940111e-02 1.000000e+00
9.950111e-02 1.000000e+00
9.960111e-02 1.000000e+00
9.970111e-02 1.000000e+00
9.980112e-02 1.000000e+00
9.990112e-02 1.000000e+00

Outdata-ctfMode64-ctfEnvelopFunction.png
By gnuplot