ctfEnvelopFunction
From EosPedia
ctfEnvelopFunction is Eos's Command.
Contents
List of option
Main option
Option | Essential/Optional | Description | Default |
---|---|---|---|
-o | Optional | Output: ASCII | stdout |
-Rmax | Optional | max Spatial frequency: [/A] | 0.1 |
-dR | Optional | delta Spatial frequency: [/A] | 0.0001 |
-kV | Optional | Acceleration voltage: [kV] | 200 |
-Cs | Optional | Spherical aberration coefficient: [mm] | 1.7 |
-df | Essential | Defocus: [A]:under(+) | 100000 |
-A | Optional | AmplitudeContrast/PhaseContrast | 0.0 |
-Ain | Optional | Illumination Aperture[mrad] | 0.02 |
-ctfMode | Optional | CTFMode | 32 |
-c | Optional | ConfigurationFile | NULL |
-m | Optional | Mode | 0 |
-h | Optional | Help |
-m details
Value | Description |
---|---|
0 |
CTFMode details
Value | Description |
---|---|
32 | with Illumination Aperture |
64 | with Energy Spread |
Execution example
Case: Options only essential
Case: df=100000
0.000000e+00 1.000000e+00 1.000000e-04 9.999994e-01 2.000000e-04 9.999977e-01 3.000000e-04 9.999949e-01 4.000000e-04 9.999909e-01 5.000000e-04 9.999858e-01 6.000000e-04 9.999795e-01 7.000000e-04 9.999721e-01 8.000000e-04 9.999635e-01 9.000000e-04 9.999539e-01 ... 9.900110e-02 5.728893e-01 9.910110e-02 5.722460e-01 9.920111e-02 5.716026e-01 9.930111e-02 5.709595e-01 9.940111e-02 5.703164e-01 9.950111e-02 5.696734e-01 9.960111e-02 5.690305e-01 9.970111e-02 5.683877e-01 9.980112e-02 5.677449e-01 9.990112e-02 5.671023e-01
Option -Rmax
Case: Rmax=0.003, df=100000
0.000000e+00 1.000000e+00 1.000000e-04 9.999994e-01 2.000000e-04 9.999977e-01 3.000000e-04 9.999949e-01 4.000000e-04 9.999909e-01 5.000000e-04 9.999858e-01 6.000000e-04 9.999795e-01 7.000000e-04 9.999721e-01 8.000000e-04 9.999635e-01 9.000000e-04 9.999539e-01 9.999999e-04 9.999430e-01 1.100000e-03 9.999311e-01 1.200000e-03 9.999180e-01 1.300000e-03 9.999037e-01 1.400000e-03 9.998884e-01 1.500000e-03 9.998719e-01 1.600000e-03 9.998542e-01 1.700000e-03 9.998354e-01 1.800000e-03 9.998155e-01 1.899999e-03 9.997944e-01 1.999999e-03 9.997722e-01 2.099999e-03 9.997489e-01 2.200000e-03 9.997244e-01 2.300000e-03 9.996988e-01 2.400000e-03 9.996720e-01 2.500000e-03 9.996441e-01 2.600000e-03 9.996151e-01 2.700000e-03 9.995849e-01 2.800000e-03 9.995536e-01 2.900000e-03 9.995211e-01
Option -dR
Case: dR=0.0002, Rmax=0.003, df=100000
0.000000e+00 1.000000e+00 2.000000e-04 9.999977e-01 4.000000e-04 9.999909e-01 6.000000e-04 9.999795e-01 8.000000e-04 9.999635e-01 9.999999e-04 9.999430e-01 1.200000e-03 9.999180e-01 1.400000e-03 9.998884e-01 1.600000e-03 9.998542e-01 1.800000e-03 9.998155e-01 2.000000e-03 9.997722e-01 2.200000e-03 9.997244e-01 2.400000e-03 9.996720e-01 2.600000e-03 9.996151e-01 2.799999e-03 9.995536e-01 2.999999e-03 9.994875e-01
Option -kV
Case: kV=1000, df=100000
0.000000e+00 1.000000e+00 1.000000e-04 9.999994e-01 2.000000e-04 9.999977e-01 3.000000e-04 9.999949e-01 4.000000e-04 9.999909e-01 5.000000e-04 9.999858e-01 6.000000e-04 9.999795e-01 7.000000e-04 9.999721e-01 8.000000e-04 9.999635e-01 9.000000e-04 9.999539e-01 ... 9.900110e-02 5.723011e-01 9.910110e-02 5.716560e-01 9.920111e-02 5.710110e-01 9.930111e-02 5.703661e-01 9.940111e-02 5.697213e-01 9.950111e-02 5.690766e-01 9.960111e-02 5.684319e-01 9.970111e-02 5.677873e-01 9.980112e-02 5.671429e-01 9.990112e-02 5.664985e-01
Option -Cs
Case: Cs=2.1, df=100000
0.000000e+00 1.000000e+00 1.000000e-04 9.999994e-01 2.000000e-04 9.999977e-01 3.000000e-04 9.999949e-01 4.000000e-04 9.999909e-01 5.000000e-04 9.999858e-01 6.000000e-04 9.999795e-01 7.000000e-04 9.999721e-01 8.000000e-04 9.999635e-01 9.000000e-04 9.999539e-01 ... 9.900110e-02 5.730467e-01 9.910110e-02 5.724038e-01 9.920111e-02 5.717610e-01 9.930111e-02 5.711183e-01 9.940111e-02 5.704757e-01 9.950111e-02 5.698332e-01 9.960111e-02 5.691907e-01 9.970111e-02 5.685483e-01 9.980112e-02 5.679060e-01 9.990112e-02 5.672638e-01
Option -Ain
Case: Ain=0.1, df=100000
0.000000e+00 1.000000e+00 1.000000e-04 9.999858e-01 2.000000e-04 9.999430e-01 3.000000e-04 9.998719e-01 4.000000e-04 9.997722e-01 5.000000e-04 9.996441e-01 6.000000e-04 9.994875e-01 7.000000e-04 9.993026e-01 8.000000e-04 9.990891e-01 9.000000e-04 9.988473e-01 ... 9.900110e-02 8.948820e-07 9.910110e-02 8.700968e-07 9.920111e-02 8.459706e-07 9.930111e-02 8.224916e-07 9.940111e-02 7.996417e-07 9.950111e-02 7.774053e-07 9.960111e-02 7.557654e-07 9.970111e-02 7.347090e-07 9.980112e-02 7.142174e-07 9.990112e-02 6.942782e-07
Option -ctfMode
Case: ctfMode=64, df=100000
0.000000e+00 1.000000e+00 1.000000e-04 1.000000e+00 2.000000e-04 1.000000e+00 3.000000e-04 1.000000e+00 4.000000e-04 1.000000e+00 5.000000e-04 1.000000e+00 6.000000e-04 1.000000e+00 7.000000e-04 1.000000e+00 8.000000e-04 1.000000e+00 9.000000e-04 1.000000e+00 ... 9.900110e-02 1.000000e+00 9.910110e-02 1.000000e+00 9.920111e-02 1.000000e+00 9.930111e-02 1.000000e+00 9.940111e-02 1.000000e+00 9.950111e-02 1.000000e+00 9.960111e-02 1.000000e+00 9.970111e-02 1.000000e+00 9.980112e-02 1.000000e+00 9.990112e-02 1.000000e+00