mrcImageFilterCreate

mrcImageFilterCreate is [Eos]]'s Command that creates mrcImage from ASCII data.

List of option

Main option

Option	Essential/Optional	Description	Default
-i	Optional	Input: ASCII	stdin
-o	Optional	Output: mrcImage	stdout
-nx	Essential	ImageSize: x	512
-ny	Optional	ImageSize: y	512
-nz	Optional	ImageSize: z	1
-sx	Essential	FilterSize: x	3
-sy	Optional	FilterSize: y	3
-sz	Optional	FilterSize: z	1
-v	Optional	Verbose
-c	Optional	ConfigurationFile	NULL
-M	Optional	Filter shape: Not implemented	0
-m	Optional	Mode	2
-h	Optional	Help

-m details

Value	Description
2	mrcImage

-i format

x1 y1 z1 weight1
x2 y2 z2 weight2
 .    .    .        .
 .    .    .        .

Execution example

-i file

20	20	0	200
20	21	0	200
20	22	0	200
20	23	0	200
20	24	0	200
20	25	0	200

...

20	37	0	200
20	38	0	200
20	39	0	200
21	20	0	200
21	21	0	200
21	22	0	200
21	23	0	200

...

39	37	0	200
39	38	0	200
39	39	0	200
0	0	0	200
1	1	0	200
2	2	0	200
3	3	0	200

...

57	57	0	200
58	58	0	200
59	59	0	200
0	59	0	200
1	58	0	200
2	57	0	200
3	56	0	200

...

17	42	0	200
18	41	0	200
19	40	0	200
40	19	0	200
41	18	0	200
42	17	0	200
43	16	0	200

...

54	5	0	200
55	4	0	200
56	3	0	200
57	2	0	200
58	1	0	200
59	0	0	200

Example of options only essential

Case: nx=512, sx=3

Min Max Mean SD SE

0 (3, 0, 0) 200 (0, 0, 0) 0.674438 11.5945 0.0226455

Option -nx, -ny, -nz

Case: nx=60, ny=60, nz=1, sx=3

Min Max Mean SD SE

0 (3, 0, 0) 200 (0, 0, 0) 48 85.4166 1.42361

Option -sx, -sy, -sz

Case: sx=1, sy=2, sz=1, nx=60, ny=60, nz=1

Min Max Mean SD SE

0 (1, 0, 0) 200 (0, 0, 0) 32.1111 73.4241 1.22374

Option -v

Case: v, nx=60, ny=60, nz=1, sx=3

np 480
p 0 20.000000 20.000000 0.000000 200.000000
p 1 20.000000 21.000000 0.000000 200.000000
p 2 20.000000 22.000000 0.000000 200.000000
p 3 20.000000 23.000000 0.000000 200.000000
p 4 20.000000 24.000000 0.000000 200.000000
p 5 20.000000 25.000000 0.000000 200.000000
p 6 20.000000 26.000000 0.000000 200.000000
p 7 20.000000 27.000000 0.000000 200.000000
p 8 20.000000 28.000000 0.000000 200.000000
p 9 20.000000 29.000000 0.000000 200.000000
p 10 20.000000 30.000000 0.000000 200.000000

...

p 470 50.000000 9.000000 0.000000 200.000000
p 471 51.000000 8.000000 0.000000 200.000000
p 472 52.000000 7.000000 0.000000 200.000000
p 473 53.000000 6.000000 0.000000 200.000000
p 474 54.000000 5.000000 0.000000 200.000000
p 475 55.000000 4.000000 0.000000 200.000000
p 476 56.000000 3.000000 0.000000 200.000000
p 477 57.000000 2.000000 0.000000 200.000000
p 478 58.000000 1.000000 0.000000 200.000000
p 479 59.000000 0.000000 0.000000 200.000000
Size 3 3 1
N    60 60 1
Shape Square
outputMode 2

There is no change in the image.

Option -M

Case: M=1, nx=60, ny=60, nz=1, sx=3

Min Max Mean SD SE

0 (2, 0, 0) 200 (0, 0, 0) 39.5556 79.6647 1.32775