mrcImageMontageCreate

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mrcImageMontageCreate is Eos's Command that creates a montage image from multiple images. (It adjusts the contrast of the images by averaging image.)


List of option

Main option

Option Essential/Optional Description Default
-i Essential Input: ASCII NULL
-o Essential Output: mrcImage NULL
-nx Optional ROI file's Num: x 10
-ny Optional ROI file's Num: y 10
-W Optional ROI file's Width 10
-H Optional ROI file's Height 10
-AW Optional AverageWindow for Pad 2000
-V Optional Addition value 0.0
-PM Optional PadMode 3
-EdgeAverage Optional
-EdgeAverageWindow Optional Definition of Edge 4
-NoAverage Optional
-Max Optional MaximumValue: If the pixel value is more than this max, the pixel value is assigned to the Value indicated by -V or -VMax. 16383
-VMax Optional Attention: related to -Max 16383
-c Optional ConfigurationFile NULL
-m Optional Mode 0
-h Optional Help  

-m details

Value Description
0

-i format

hf0000.roi
hf0001.roi
..........
hf000n.roi


Execution example

Input file's data

/Eos/inputnoise-0000.roi
/Eos/inputnoise-0001.roi
/Eos/inputnoise-0002.roi
/Eos/inputnoise-0003.roi
/Eos/inputnoise-0004.roi
/Eos/inputnoise-0005.roi
/Eos/inputnoise-0006.roi
/Eos/inputnoise-0007.roi
/Eos/inputnoise-0008.roi
/Eos/inputnoise-0009.roi
/Eos/inputnoise-0010.roi
/Eos/inputnoise-0011.roi
/Eos/inputnoise-0012.roi
/Eos/inputnoise-0013.roi
/Eos/inputnoise-0014.roi
/Eos/inputnoise-0015.roi

ROI file used(Upper left → Upper right: 0000 - 0008、Lower left → Lower right: 0008 - 0015)
Inputnoise-0000.roi-mrcImageROIs.png Inputnoise-0001.roi-mrcImageROIs.png Inputnoise-0002.roi-mrcImageROIs.png Inputnoise-0003.roi-mrcImageROIs.png Inputnoise-0004.roi-mrcImageROIs.png Inputnoise-0005.roi-mrcImageROIs.png Inputnoise-0006.roi-mrcImageROIs.png Inputnoise-0007.roi-mrcImageROIs.png
Inputnoise-0008.roi-mrcImageROIs.png Inputnoise-0009.roi-mrcImageROIs.png Inputnoise-0010.roi-mrcImageROIs.png Inputnoise-0011.roi-mrcImageROIs.png Inputnoise-0012.roi-mrcImageROIs.png Inputnoise-0013.roi-mrcImageROIs.png Inputnoise-0014.roi-mrcImageROIs.png Inputnoise-0015.roi-mrcImageROIs.png


Example of options only essential

Outdata-mrcImageMontageCreate.png

Min

Max
Mean
SD

SE

-133.274 (105, 21, 0)

176.036 (132, 0, 0)
13.9823
113.153

1.20485


Option -nx, -ny

Case: nx=4, ny=4

Outdata-nxny-mrcImageMontageCreate.png

Min

Max
Mean
SD

SE

-133.274 (63, 63, 0)

176.036 (48, 21, 0)
17.4778
126.268

1.50319


Option -W, -H

Case: W=10, H=42, nx=4, ny=4

Outdata-WH-mrcImageMontageCreate.png

Min

Max
Mean
SD

SE

-133.274 (33, 130, 0)

176.036 (20, 50, 0)
13.3644
92.0112

1.15014


Option -V

Case: V=-16, nx=4, ny=4

Outdata-V-mrcImageMontageCreate.png

Min

Max
Mean
SD

SE

-149.274 (63, 63, 0)

160.036 (48, 21, 0)
1.47782
126.268

1.50319


Option -PM

Case: PM=0, nx=4, ny=4

Outdata-PM-mrcImageMontageCreate.png

Min

Max
Mean
SD

SE

-168.927 (63, 0, 0)

160.828 (48, 21, 0)
-1.21858e-06
124.739

1.48499


Option -NoAverage

Case: NoAverage, nx=4, ny=4

Outdata-NoAverage-mrcImageMontageCreate.png

Min

Max
Mean
SD

SE

-143.846 (66, 21, 0)

174.773 (68, 1, 0)
17.4778
131.393

1.5642


Option -Max

Case: Max=150, nx=4, ny=4

Outdata-Max-mrcImageMontageCreate.png

Min

Max
Mean
SD

SE

-133.274 (63, 63, 0)

148.857 (26, 21, 0)
4.4666
118.645

1.41244


Option -VMax

Case: VMax=150, Max=150, nx=4, ny=4

Outdata-VMax-mrcImageMontageCreate.png

Min

Max
Mean
SD

SE

-133.274 (63, 63, 0)

150 (47, 21, 0)
16.2863
124.917

1.48711