mrcImageOddBoxel

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mrcImageOddBoxel is Eos's Command.


List of option

Main option

Option Essential/Optional Description Default
-I Essential Input: ASCII (mrcImage List) stdin
-Iter Optional IterationFlag
-M Optional MolecularWeight (for iteration only) 1.0
-n Optional NumberOfMolecule (for iteration only) 1.0
-Boxel Optional Final volume for iteration uning boxel unit 0
-d Optional Density (for iteration only) 1.35
-I Optional Inverse (for iteration only)
-Abs Optional AbsoluteFlag
-Th Optional Threshold for calculation. (for iteration only) 0.0
-c Optional ConfigurationFile NULL
-m Optional Mode 0
-h Optional Help  

-m details

Value Description
0

-i format

mrcFile1
mrcFile2
.
.
.


Execution example

Input file's data

/Eos/img/1VOM-40.mrc
/Eos/img/1VOM-45.mrc
/Eos/img/1VOM-50.mrc
/Eos/img/1VOM-55.mrc
/Eos/img/1VOM-60.mrc
/Eos/img/1VOM-65.mrc

1VOM-40.mrc's image
1VOM-40.png

Min

Max
Mean
SD

SE

0 (0, 0, 0)

3077.54 (41, 49, 0)
126.786
387.323

4.84154

1VOM-45.mrc's image
1VOM-45.png

Min

Max
Mean
SD

SE

0 (0, 0, 0)

3099.59 (17, 62, 0)
123.791
381.654

4.77068

1VOM-50.mrc's image
1VOM-50.png

Min

Max
Mean
SD

SE

0 (0, 0, 0)

3095.88 (33, 57, 0)
143.393
399.986

4.99982

1VOM-55.mrc's image
1VOM-55.png

Min

Max
Mean
SD

SE

0 (0, 0, 0)

3044.97 (51, 58, 0)
148.952
413.856

5.1732

1VOM-60.mrc's image
1VOM-60.png

Min

Max
Mean
SD

SE

0 (0, 0, 0)

3026.91 (50, 47, 0)
129.875
386.428

4.83035

1VOM-65.mrc's image
1VOM-65.png

Min

Max
Mean
SD

SE

0 (0, 0, 0)

3308.47 (26, 42, 0)
105.169
351.901

4.39877


Example of options only essential

Depending on each input file, (Input file).score is output.

1VOM-40.mrc.score's image
Outdata-mrcImageOddBoxel.png

Min

Max
Mean
SD

SE

-1.42114 (29, 17, 0)

2.04124 (2, 27, 0)
-0.0197871
0.764218

0.00955272

1VOM-45.mrc.score's image
Outdata1-mrcImageOddBoxel.png

Min

Max
Mean
SD

SE

-1.83809 (22, 35, 0)

2.04124 (67, 51, 0)
-0.0561763
0.700513

0.00875641

1VOM-50.mrc.score's image
Outdata2-mrcImageOddBoxel.png

Min

Max
Mean
SD

SE

-1.28819 (32, 47, 0)

2.04124 (51, 2, 0)
0.0365122
0.771584

0.0096448

1VOM-55.mrc.score's image
Outdata3-mrcImageOddBoxel.png

Min

Max
Mean
SD

SE

-1.56769 (31, 48, 0)

2.04124 (37, 5, 0)
0.0387604
0.787144

0.0098393

1VOM-60.mrc.score's image
Outdata4-mrcImageOddBoxel.png

Min

Max
Mean
SD

SE

-1.53558 (41, 52, 0)

2.04124 (57, 22, 0)
7.09678e-07
0.748489

0.00935612

1VOM-65.mrc.score's image
Outdata5-mrcImageOddBoxel.png

Min

Max
Mean
SD

SE

-1.62873 (22, 60, 0)

2.04124 (19, 3, 0)
0.000690029
0.82345

0.0102931


Option -Iter

1VOM-40.mrc.score's image
Outdata-Iter-mrcImageOddBoxel.png

Min

Max
Mean
SD

SE

-0.851998 (56, 33, 0)

1.58332e+11 (14, 68, 0)
6.41423e+07
2.67338e+09

3.34173e+07

1VOM-65.mrc.score's image
Outdata5-Iter-mrcImageOddBoxel.png

Min

Max
Mean
SD

SE

-1.00711 (42, 62, 0)

5.4919e+11 (59, 58, 0)
1.60488e+08
8.09614e+09

1.01202e+08