pdbProteinIDSet
From EosPedia
pdbProteinIDSet is Eos's Command that changes Chain ID in PDB file.
Contents
List of option
Main option
| Option | Essential/Optional | Description | Default |
|---|---|---|---|
| -i | Essential | Input: PDB | NULL |
| -o | Essential | Output: PDB | NULL |
| -ID | Essential | Chain ID | A |
| -c | Optional | ConfigurationFile | NULL |
| -m | Optional | Mode | 0 |
| -h | Optional | Help |
-m details
| Value | Description |
|---|---|
| 0 |
Execution example
Input file image
 |
Gravity Centre(CA) Atom far from Centre(CA) |
6.053012e+00 2.519590e+01 1.189075e+01 3.286664e+01 |
By Editor
... ATOM 1 N MET A 1 -7.176 32.630 -6.655 1.00 14.06 N ATOM 2 CA MET A 1 -5.913 31.928 -6.676 1.00 17.27 C ATOM 3 C MET A 1 -5.903 30.860 -5.600 1.00 16.41 C ATOM 4 O MET A 1 -6.703 30.881 -4.654 1.00 16.12 O ATOM 5 CB MET A 1 -4.712 32.869 -6.415 1.00 17.94 C ATOM 6 CG MET A 1 -4.594 33.420 -4.990 1.00 19.41 C ATOM 7 SD MET A 1 -3.193 34.558 -4.899 1.00 21.82 S ATOM 8 CE MET A 1 -4.325 35.886 -4.618 1.00 23.68 C ATOM 9 N THR A 2 -4.966 29.934 -5.760 1.00 15.08 N ATOM 10 CA THR A 2 -4.759 28.930 -4.751 1.00 16.71 C ...
Case: Options only essential
Case: ID=B
By Editor
... ATOM 1 N MET B 1 -7.176 32.630 -6.655 1.00 14.06 0 N ATOM 2 CA MET B 1 -5.913 31.928 -6.676 1.00 17.27 0 C ATOM 3 C MET B 1 -5.903 30.860 -5.600 1.00 16.41 0 C ATOM 4 O MET B 1 -6.703 30.881 -4.654 1.00 16.12 0 O ATOM 5 CB MET B 1 -4.712 32.869 -6.415 1.00 17.94 0 C ATOM 6 CG MET B 1 -4.594 33.420 -4.990 1.00 19.41 0 C ATOM 7 SD MET B 1 -3.193 34.558 -4.899 1.00 21.82 0 S ATOM 8 CE MET B 1 -4.325 35.886 -4.618 1.00 23.68 0 C ATOM 9 N THR B 2 -4.966 29.934 -5.760 1.00 15.08 0 N ATOM 10 CA THR B 2 -4.759 28.930 -4.751 1.00 16.71 0 C ...
