Difference between revisions of "mrcImageCircumferentialProjection"

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(Created page with "'''mrcImageCircumferentialProjection''' is Eos's Command that transforms the 3D image to a cylindrical coordinate system, and shows only that particular range. == Li...")
 
(→‎List of option)
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<td>-dang</td>  
 
<td>-dang</td>  
 
<td>Optional</td>  
 
<td>Optional</td>  
−
<td>角度の加算値: [deree]</td>  
+
<td>Delta Angle: [deree]</td>  
 
<td>10</td>  
 
<td>10</td>  
 
</tr>  
 
</tr>  
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<td>-zmin</td>  
 
<td>-zmin</td>  
 
<td>Optional</td>  
 
<td>Optional</td>  
−
<td>Zの最小値: [A]</td>  
+
<td>Z Minimum: [A]</td>  
 
<td>0</td>  
 
<td>0</td>  
 
</tr>  
 
</tr>  
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<td>-zmax</td>  
 
<td>-zmax</td>  
 
<td>Optional</td>  
 
<td>Optional</td>  
−
<td>Zの最大値: [A]</td>  
+
<td>Z Maximum: [A]</td>  
 
<td>100</td>  
 
<td>100</td>  
 
</tr>  
 
</tr>  
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<td>-dz</td>  
 
<td>-dz</td>  
 
<td>Optional</td>  
 
<td>Optional</td>  
−
<td>Zの加算値: [A]</td>  
+
<td>Delta Z: [A]</td>  
 
<td>10</td>  
 
<td>10</td>  
 
</tr>  
 
</tr>  
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<td>-rmin</td>  
 
<td>-rmin</td>  
 
<td>Optional</td>  
 
<td>Optional</td>  
−
<td>半径の最小値: [A]</td>  
+
<td>Radius Minimum: [A]</td>  
 
<td>0</td>  
 
<td>0</td>  
 
</tr>  
 
</tr>  
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<td>-rmax</td>  
 
<td>-rmax</td>  
 
<td>Optional</td>  
 
<td>Optional</td>  
−
<td>半径の最大値: [A]</td>  
+
<td>Radius Maximum: [A]</td>  
 
<td>200</td>  
 
<td>200</td>  
 
</tr>  
 
</tr>  
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<td>-dr</td>  
 
<td>-dr</td>  
 
<td>Optional</td>  
 
<td>Optional</td>  
−
<td>半径の加算値: [A]</td>  
+
<td>Delta Radius: [A]</td>  
 
<td>10</td>  
 
<td>10</td>  
 
</tr>  
 
</tr>  
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<td>-threshold</td>  
 
<td>-threshold</td>  
 
<td>Optional</td>  
 
<td>Optional</td>  
−
<td>閾値を設定(平均密度が閾値以上)</td>  
+
<td>Set threshold value. (Averaged density is more than threshold value)</td>  
 
<td>0</td>  
 
<td>0</td>  
 
</tr>  
 
</tr>  
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<tr>  
 
<tr>  
 
<td>0</td>  
 
<td>0</td>  
−
<td>平均密度を出力 (dataSum = dataSum / nang)</td>  
+
<td>Out Put Averaged Density (dataSum = dataSum / nang)</td>  
 
</tr>  
 
</tr>  
 
<tr>  
 
<tr>  
 
<td>1</td>  
 
<td>1</td>  
−
<td>加重密度を出力 (dataSum = dataSum / nang *(2*PI*r))</td>  
+
<td>Out Put Added    Density (dataSum = dataSum / nang *(2*PI*r))</td>  
 
</tr>  
 
</tr>  
 
<tr>  
 
<tr>  
 
<td>2</td>  
 
<td>2</td>  
−
<td>閾値以上の平均密度を出力 (dataSum = dataSum / [nang number more than threshold value] *(2*PI*r))</td>  
+
<td>Out Put Averaged Density more than threshold (dataSum = dataSum / [nang number more than threshold value] *(2*PI*r))</td>  
 
</tr>  
 
</tr>  
−
</table>  
+
</table>
−
 
+
  
 
== Execution example ==
 
== Execution example ==

Revision as of 01:02, 23 July 2014

mrcImageCircumferentialProjection is Eos's Command that transforms the 3D image to a cylindrical coordinate system, and shows only that particular range.


List of option

Main option

Option Essential/Optional Description Default
-i Essential Input: mrcImage NULL
-o Essential Output: mrcImage NULL
-dang Optional Delta Angle: [deree] 10
-zmin Optional Z Minimum: [A] 0
-zmax Optional Z Maximum: [A] 100
-dz Optional Delta Z: [A] 10
-rmin Optional Radius Minimum: [A] 0
-rmax Optional Radius Maximum: [A] 200
-dr Optional Delta Radius: [A] 10
-threshold Optional Set threshold value. (Averaged density is more than threshold value) 0
-c Optional ConfigurationFile NULL
-m Optional Mode 0
-h Optional Help 　

-m details

Value Description
0 Out Put Averaged Density (dataSum = dataSum / nang)
1 Out Put Added Density (dataSum = dataSum / nang *(2*PI*r))
2 Out Put Averaged Density more than threshold (dataSum = dataSum / [nang number more than threshold value] *(2*PI*r))

Execution example

Input file image

Input-ThickFilaments2.png
xy-plane

Input1-ThickFilaments2.png
yz-plane

Min

Max
Mean
SD

SE

0 (0, 0, 0)

5.57707 (44, 26, 0)
0.0491543
0.360381

0.000522291


Example of options only essential

Outdata-mrcImageCircumferentialProjection.png

Min

Max
Mean
SD

SE

0 (0, 0, 0)

3.12088 (10, 6, 0)
0.113243
0.444362

0.0292369


Option -rmin, -rmax, dr

rmin=90, rmax=110, dr=1

Outdata-rminrmaxdr-mrcImageCircumferentialProjection.png

Min

Max
Mean
SD

SE

0.0895108 (20, 4, 0)

3.12088 (10, 6, 0)
1.12399
0.711393

0.0468062


In the following, Setting atrmin=90, rmax=110, dr=1で実行


Option -dang

dang=1

Outdata-dang-mrcImageCircumferentialProjection.png

Min

Max
Mean
SD

SE

0.0659651 (20, 4, 0)

3.25403 (9, 6, 0)
1.16162
0.746197

0.0490961


Option -zmin, -zmax, -dz

zmin=10, zmax=50, dz=1

Case: No other settings
Outdata-zminzmaxdz-mrcImageCircumferentialProjection.png

Min

Max
Mean
SD

SE

0.0895382 (20, 4, 0)

2.17163 (10, 25, 0)
1.07994
0.645594

0.0220018


threshold=1.8
Outdata-threshold-mrcImageCircumferentialProjection.png

Min

Max
Mean
SD

SE

0 (0, 0, 0)

1.78549 (11, 25, 0)
0.511454
0.599524

0.0204317


Option -m

m=1

Outdata-m1-mrcImageCircumferentialProjection.png

Min

Max
Mean
SD

SE

61.8654 (20, 4, 0)

1960.91 (10, 6, 0)
705.471
447

29.4105


m=2, threshold=2

Outdata-m2-mrcImageCircumferentialProjection.png

Min

Max
Mean
SD

SE

0 (0, 0, 0)

3.68241 (11, 6, 0)
1.1925
1.19853

0.0788573
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