mrcImageParticleCandidateExtract

mrcImageParticleCandidateExtract is Eos's Command that extracts a candidate of particle by finding the higher density than around image.

List of option

Main option

Option	Essential/Optional	Description	Default
-i	Essential	Input: mrcImage	NULL
-o	Essential	Output: mrcImage	NULL
-RR	Optional	Input: [A]	100.0
-RW	Optional	Input: [A]	10.0
-thres	Optional	Input: threshold of IQ	3.0
-out	Optional	Output	stdout
-c	Optional	ConfigurationFile	NULL
-m	Optional	Mode	0
-h	Optional	Help

-m details

Value	Description
0

Execution example

Input file's image

Min Max Mean SD SE

0 255 21.0538 47.6709 0.595886

Example of options only essential

Output file's image

Min Max Mean SD SE

0 255 9.36703 42.704 0.5338

-out data

38.000000 24.000000 0.000000 3.285927
39.000000 24.000000 0.000000 5.289909
40.000000 24.000000 0.000000 6.301086
41.000000 24.000000 0.000000 5.084664
51.000000 24.000000 0.000000 3.458355
52.000000 24.000000 0.000000 3.290684

...

36.000000 58.000000 0.000000 7.257681
37.000000 58.000000 0.000000 6.887584
38.000000 58.000000 0.000000 5.179653
39.000000 58.000000 0.000000 3.826627
35.000000 59.000000 0.000000 3.485140
36.000000 59.000000 0.000000 4.024090

Option -RR

Case: RR=50

Min Max Mean SD SE

0 7 0.217344 0.741059 0.00926323

Option -RW

Case: RW=30

Min Max Mean SD SE

0 255 6.42328 32.0784 0.40098

Option -thres

Case: thres=1

output file's image

Min Max Mean SD SE

0 255 9.36703 42.704 0.5338

-out Output

47.000000 19.000000 0.000000 1.098040
48.000000 19.000000 0.000000 1.125516
46.000000 20.000000 0.000000 1.035438
47.000000 20.000000 0.000000 1.264296
48.000000 20.000000 0.000000 1.169891
49.000000 20.000000 0.000000 1.004437

...

29.000000 62.000000 0.000000 1.318240
30.000000 62.000000 0.000000 1.408884
31.000000 62.000000 0.000000 1.180901
33.000000 62.000000 0.000000 1.042541
34.000000 62.000000 0.000000 1.174146
35.000000 62.000000 0.000000 1.107767