mrcImageRefCreate

mrcImageRefCreate is Eos's Command that creates reference projection image used 3D Reconstruction.

List of option

Main option

Option	Essential/Optional	Description	Default
-i	Essential	Input: mrcImage(3D)	NULL
-o	Essential	Output: mrcImage(2DSet)	NULL
-p	Optional	Position of Center of model creation: [degree]: (Phi, Omega, Alpha)	(0, 0, 0)
-w	Optional	Width: [±degree]: (Phi, Omega, Alpha)	(360, 10, 10)
-d	Optional	Interval of model creation: [degree]: (Phi, Omega, Alpha)	(5, 5, 5)
-x	Optional	Data length of x in the outputfile.	Data length of x in the inputfile
-c	Optional	ConfigurationFile	NULL
-m	Optional	Mode	0
-h	Optional	Help

Phi: around Z axis, Omega: around Y axis, Alpha: around X axis

-m details

Value	Description
0	Usual mode
1	Magnification is changed to unchange molecular distance.

Execution example

Input file image

xy-plane

yz-plane

Min Max Mean SD SE

0 (0, 0, 0) 3500.79 (24, 28, 5) 88.3104 323.414 0.914753

Option -w

Case: w=(30, 0, 0)

Min Max Mean SD SE

-618.193 (35, 39, 6) 37724 (22, 29, 11) 4099.57 5776.94 30.879

z=0(Header) By mrcImageMakeDump

0 0 0 
1 0 0 
2 0 0 
3 0 5 
4 0 5 
5 0 5 
6 0 30 
7 0 0 
8 0 0 
9 0 0 
10 0 0 
11 0 0 
12 0 0 
13 0 0 
14 0 0 
15 0 0 

...

Case: w=(0, 15, 0)

Min Max Mean SD SE

-847.927 (14, 27, 4) 33249 (13, 17, 5) 5834.45 6371.51 59.158

z=0(Header) By mrcImageMakeDump

0 0 0 
1 0 0 
2 0 0 
3 0 5 
4 0 5 
5 0 5 
6 0 0 
7 0 15 
8 0 0 
9 0 0 
10 0 0 
11 0 0 
12 0 0 
13 0 0 
14 0 0 
15 0 0 

...

Case: w=(0, 0, 15)

Min Max Mean SD SE

-1630.77 (24, 32, 7) 29967.2 (28, 19, 1) 4257.55 5978.44 45.3746

z=0(Header) By mrcImageMakeDump

0 0 0 
1 0 0 
2 0 0 
3 0 5 
4 0 5 
5 0 5 
6 0 0 
7 0 0 
8 0 15 
9 0 0 
10 0 0 
11 0 0 
12 0 0 
13 0 0 
14 0 0 
15 0 0 

...

Option -d

Case: d=(30, 5, 5), w=(180, 0, 0)

Min Max Mean SD SE

-581.161 (19, 13, 3) 36079.7 (23, 28, 5) 4099.7 5771.83 30.8517

z=0(Header) By mrcImageMakeDump

0 0 0 
1 0 0 
2 0 0 
3 0 30 
4 0 5 
5 0 5 
6 0 180 
7 0 0 
8 0 0 
9 0 0 
10 0 0 
11 0 0 
12 0 0 
13 0 0 
14 0 0 
15 0 0 

...

Option -p

Case: p=(30, 0, 0), w=(30, 0, 0)

Min Max Mean SD SE

-586.437 (45, 25, 4) 42135.5 (31, 26, 12) 4099.79 5869.56 31.3741

z=0(Header) By mrcImageMakeDump

0 0 30 
1 0 0 
2 0 0 
3 0 5 
4 0 5 
5 0 5 
6 0 30 
7 0 0 
8 0 0 
9 0 0 
10 0 0 
11 0 0 
12 0 0 
13 0 0 
14 0 0 
15 0 0 

...

Option -x

Case: x=30, w=(30, 0, 0)

Min Max Mean SD SE

-618.193 (25, 39, 6) 37724 (12, 29, 11) 6170.05 6385.51 44.0642

z=0(Header) By mrcImageMakeDump

0 0 0 
1 0 0 
2 0 0 
3 0 5 
4 0 5 
5 0 5 
6 0 30 
7 0 0 
8 0 0 
9 0 0 
10 0 0 
11 0 0 
12 0 0 
13 0 0 
14 0 0 
15 0 0 

...

Option -m

Case: m=1, w=(0, 15, 0)

Min Max Mean SD SE

-3757.87 (20, 0, 7) 32675.7 (13, 17, 5) 5959.8 6481.03 60.1748

z=0(Header) By mrcImageMakeDump

0 0 0 
1 0 0 
2 0 0 
3 0 5 
4 0 5 
5 0 5 
6 0 0 
7 0 15 
8 0 0 
9 0 0 
10 0 0 
11 0 0 
12 0 0 
13 0 0 
14 0 0 
15 0 0 

...