mrcRefHeaderCreate

mrcRefHeaderCreate is Eos's Command that adds Ref Header to Reference Projection Image. This Ref Header means stored information at z=0, and it is entirely different to Header of mrcImage file.

List of option

Main option

Option	Essential/Optional	Description	Default
-i	Essential	Input: mrcImage	NULL
-o	Essential	Output: mrcImage	NULL
-p	Optional	Position of Center of model creation:(Phi[degree], Omega[degree], Alpha[degree])	(0, 0, 0)
-w	Optional	Width:(Phi[±degree], Omega[±degree], Alpha[±degree])	(360, 10, 10)
-d	Optional	Interval of model creation[degree] :(Phi[around z axis], Omega[y axis], Alpha[x axis])	(5, 5, 5)
-sy	Optional	Start y (For m=1 only)	0
-ey	Optional	End y (For m=1 only, default: Ny-1)	0
-refsize	Optional	Size of reference data.	0
-c	Optional	ConfigurationFile	NULL
-m	Optional	Mode	0
-h	Optional	Help

-p: Omega and Alpha range must be around 0 or 180.

-m details

Value	Description
0
1

Execution example

Input file image

z=156 ~ 170

Size Mode Min Max Mean SD SE

( 56, 27, 326) mrcFloatImage -1503.16 (14, 25, 131) 36873.4 (28, 20, 158) 6082.23 6479.76 9.22942

Example of options only essential

z=0 's data By mrcImageMakeDump

0 0 0 
1 0 0 
2 0 0 
3 0 5 
4 0 5 
5 0 5 
6 0 360 
7 0 10 
8 0 10 
9 0 0 
10 0 0 
11 0 0 
12 0 0 
13 0 0 
14 0 0 
15 0 0 

...

z=156 ~ 170's image

Size Mode Min Max Mean SD SE

( 56, 27, 327) mrcFloatImage -1503.16 (14, 25, 132) 36873.4 (28, 20, 159) 6063.63 6478.56 9.21358

Ref Header is added at z=0, and each image shifts to next one.

Option -p

Case: p=(11, 12, 13)

z=0 's data By mrcImageMakeDump

0 0 11 
1 0 12 
2 0 13 
3 0 5 
4 0 5 
5 0 5 
6 0 360 
7 0 10 
8 0 10 
9 0 0 
10 0 0 
11 0 0 
12 0 0 
13 0 0 
14 0 0 
15 0 0 

...

Option -w

Case: w=(20, 30, 40)

z=0 's data By mrcImageMakeDump

0 0 0 
1 0 0 
2 0 0 
3 0 5 
4 0 5 
5 0 5 
6 0 20 
7 0 30 
8 0 40 
9 0 0 
10 0 0 
11 0 0 
12 0 0 
13 0 0 
14 0 0 
15 0 0 

...

Option -d

Case: d=(2, 6, 8)

z=0 's data By mrcImageMakeDump

0 0 0 
1 0 0 
2 0 0 
3 0 2 
4 0 6 
5 0 8 
6 0 360 
7 0 10 
8 0 10 
9 0 0 
10 0 0 
11 0 0 
12 0 0 
13 0 0 
14 0 0 
15 0 0 

...

Option -m

Case: m=1

Case: No other settings

z=0 's data By mrcImageMakeDump

0 0 0 
1 0 0 
2 0 0 
3 0 5 
4 0 5 
5 0 5 
6 0 360 
7 0 10 
8 0 10 
9 0 0 
10 0 26 
11 0 0 
12 0 2.44886e+08 
13 0 0 
14 0 0 
15 0 0 

...

Case: sy=7 ,ey=33, refsize=44

z=0 's data By mrcImageMakeDump

0 0 0 
1 0 0 
2 0 0 
3 0 5 
4 0 5 
5 0 5 
6 0 360 
7 0 10 
8 0 10 
9 0 7 
10 0 33 
11 0 44 
12 0 3.72162e+06 
13 0 0 
14 0 0 
15 0 0 

...