mrcRefImageCorrelation

mrcRefImageCorrelation is Eos's Command that outputs max and min of correlation value between Input mrcImage(single or multiple) and Reference(2DSet).

List of option

Main option

Option	Essential/Optional	Description	Default
-i	Optional	Input: mrcImage(2D)	NULL
-r	Essential	Reference: mrcImage(2DSet)	NULL
-I	Optional	Input: ASCII (File List)	stdin
-c	Optional	ConfigurationFile	NULL
-m	Optional	Mode	0
-h	Optional	Help

-m details

Value	Description
0	To find the images in the reference file of min and max correlation. Correlation is calclated in the real space.
1	To calculate the correlation between one image of the reference file and input file. The calculation is performed in the fourier space and the output is mrcImage option z is needed.

-I format

mrcFile1
mrcFile2
.
.
.

Execution example

Reference file image

z=163

Size Mode Min Max Mean SD SE

( 56, 27, 326) mrcFloatImage -1503.16 (14, 25, 131) 36873.4 (28, 20, 158) 6082.23 6479.76 9.22942

Option -i

Input file is specified

-i 's image

Min Max Mean SD SE

-11845.8 (6, 13, 0) 35379.1 (26, 16, 0) 5971.45 7299.77 187.73

Output

0 0.74104
1 0.758584
2 0.773967
3 0.78247
4 0.779196

...

160 0.819107
161 0.867341
162 0.937789
163 0.866901
164 0.803931

...

320 0.74582
321 0.756335
322 0.768114
323 0.782429
324 0.785562
min 205 0.729216
max 162 0.937789

Option -I

Input file is specified

-I 's data

/Eos/img/Input-121P1-R162.mrc
/Eos/img/Input-121P1-R163-N.mrc
/Eos/img/Input-121P1-R164-N.mrc

Input-121P1-R162.mrc's image

Min Max Mean SD SE

-1191.36 (16, 25, 0) 28576.9 (15, 16, 0) 6076.13 6529.7 167.926

-i 's Input file is used as Input-121P1-R163-N.mrc

Input-121P1-R164-N.mrc's image

Min Max Mean SD SE

-20586.3 (8, 8, 0) 38227.9 (16, 18, 0) 6292.81 9386.21 241.387

Output

/Eos/img/Input-121P1-R162.mrc min 270 0.787533 max 161 1
/Eos/img/Input-121P1-R163-N.mrc min 205 0.729216 max 162 0.937789
/Eos/img/Input-121P1-R164-N.mrc min 5 0.62733 max 163 0.816337