mrcSinogramFETcalcSDforNormalize
From EosPedia
mrcSinogramFETcalcSDforNormalize is Eos's Command.
Contents
List of option
Main option
| Option | Essential/Optional | Description | Default |
|---|---|---|---|
| -i | Optional | Input: mrcImage(FET) | NULL |
| -s | Optional | selectFETfile | 1 |
| -l | Essential | SDlibraryFile: mrcImage | NULL |
| -o | Optional | Output: mrcImage(SD) | NULL |
| -ow | Optional | Output: mrcImage(Weight) | |
| -c | Optional | ConfigurationFile | NULL |
| -m | Optional | Mode | 0 |
| -h | Optional | Help |
-m details
| Value | Description |
|---|---|
| 0 | Read SDlibraryFile, and Output to -o, -ow.(Essential: -l) |
| 1 | SDlibraryFile is Overwrite(Essential: -s, -i, -l) |
SDlibraryFile is created by array2mrc. (Size: x=(FeaturesNum + 1), y=6(if you use -ow, y=8), z=0, data: all 0.0)
-s details
| Value | Description |
|---|---|
| 0 | noise-free refarence FETdata |
| 1 | no-smoothing FET data |
| Otherwise | smoothed FET data |
Execution example
Input file's data
-i 's file
file2: Smoothing data of file1
file3: Smoothing data of file1
-l 's file
file4: by mrcImageMakeDump(m=8)
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
file5: by mrcImageMakeDump(m=8)
1 6.10919e-05 0.0512343 0.0529243
1 0.0402937 -0.000261387 2.38748
1 5.77048e-05 0.0515095 0.053126
1 0.0401005 -0.000252081 2.39499
1 2.88663e+08 2.28348e+08 2.43567e+08
1 37006.6 23393.5 24685.6
1 4.11992e-05 0.0337029 0.0439789
1 0.0440661 -0.00141426 2.35982
Example of options only essential
-l: using file5
-o 's data by mrcImageMakeDump(m=8)
2.06095e+08 1.49409e+08 2.0163e+08
-ow 's data by mrcImageMakeDump(m=8)
0 2.24369e-10 2.17289e-10
Option -m
Case: m=1
-l: using file4
Case: s=0
-i: using file0
-l 's data by mrcImageMakeDump(m=8)
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
1 4.11992e-05 0.0337029 0.0439789
1 0.0440661 -0.00141426 2.35982
Case: s=1
-i: using file1
-l 's data by mrcImageMakeDump(m=8)
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
1 2.88663e+08 2.28348e+08 2.43567e+08
1 37006.6 23393.5 24685.6
0 0 0 0
0 0 0 0
s=2
-i: using file2
-l 's data by mrcImageMakeDump(m=8)
0 0 0 0
0 0 0 0
1 5.77048e-05 0.0515095 0.053126
1 0.0401005 -0.000252081 2.39499
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
s=3
-i: file3を使用して実行
-l 's data by mrcImageMakeDump(m=8)
1 6.10919e-05 0.0512343 0.0529243
1 0.0402937 -0.000261387 2.38748
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
