mrcSinogramFETreferredCorrelation

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mrcSinogramFETreferredCorrelation is Eos's Command.


List of option

Main option

Option Essential/Optional Description Default
-i Essential Input: ASCII (File List) NULL
-iRef Essential Reference: ASCII (File List) NULL
-iEuler Essential InputEulerAngleDataFile: ASCII NULL
-o Essential OutputEulerAngleDataFileList: ASCII NULL
-nm Optional normalizeMode 0
-om Optional outputListMode 2
-tn Optional top number 10
-refR Optional reference select Range 15
-w Optional CorrelationCalcWeight NULL
-c Optional ConfigurationFile NULL
-m Optional Mode 0
-h Optional Help 　


-m details

Value Description
0


-nm details

Value Description
0 normalize with average and SD of whole inputfile
references and datas will be normalize independently
1 for using normalized inputFETdata


-om details

Value Description
0 output anglelist only top1 angle set
1 selected angle sets
2 top -tn angle sets
option -tn,-refR are for outputListMode!=0

-tn  : number of referenceMaps be considerd in selection

-refR : step size when generate referenceMapSet from 3D image is recommend


-i, -iRef format

FETfile1
FETfile2
.
.


-iEuler format

file	Mode	Rot1		Rot2		Rot3
.	.		.		.		.
.	.		.		.		.


Execution example

Input file's data

-i 's data
Input-1VOM-N-2D-FET.radon
Input-1VOM-N-2D1-FET.radon
Input-1VOM-N-Rot2-2D-FET.radon


-iRef 's data
Input-1VOM-2D-FET.radon
Input-1VOM-Rot-2D-FET.radon
Input-1VOM-Rot3-2D-FET.radon


iEuler 's data
Input-1VOM-N-2D-FET.radon		YOYS	0		0		0
Input-1VOM-N-2D1-FET.radon		YOYS	90		0		90
Input-1VOM-N-Rot2-2D-FET.radon	YOYS	0		0		45


Example of options only essential

Input-1VOM-N-2D-FET.radon YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 YOYS 0.000000 0.000000 -358.000000 1000.000000 2 YOYS 0.000000 0.000000 0.000000 0.000000 -1 YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 YOYS 0.000000 0.000000 -358.000000 1000.000000 2 YOYS 0.000000 0.000000 0.000000 0.000000 -1 YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 
Input-1VOM-N-2D1-FET.radon YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 YOYS 0.000000 0.000000 -358.000000 1000.000000 2 YOYS 0.000000 0.000000 0.000000 0.000000 -1 YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 YOYS 0.000000 0.000000 -358.000000 1000.000000 2 YOYS 0.000000 0.000000 0.000000 0.000000 -1 YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 
Input-1VOM-N-Rot2-2D-FET.radon YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 YOYS 0.000000 0.000000 -358.000000 1000.000000 2 YOYS 0.000000 0.000000 0.000000 0.000000 -1 YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 YOYS 0.000000 0.000000 -358.000000 1000.000000 2 YOYS 0.000000 0.000000 0.000000 0.000000 -1 YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1


Option -nm

Case: nm=1

Input-1VOM-N-2D-FET.radon YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 YOYS 0.000000 0.000000 -358.000000 1000.000000 2 YOYS 0.000000 0.000000 0.000000 0.000000 -1 YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 YOYS 0.000000 0.000000 -358.000000 1000.000000 2 YOYS 0.000000 0.000000 0.000000 0.000000 -1 YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 
Input-1VOM-N-2D1-FET.radon YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 YOYS 0.000000 0.000000 -358.000000 1000.000000 2 YOYS 0.000000 0.000000 0.000000 0.000000 -1 YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 YOYS 0.000000 0.000000 -358.000000 1000.000000 2 YOYS 0.000000 0.000000 0.000000 0.000000 -1 YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 
Input-1VOM-N-Rot2-2D-FET.radon YOYS 90.000000 0.000000 -354.000000 118.737266 1 YOYS 0.000000 0.000000 -233.000000 169.285555 2 YOYS 0.000000 0.000000 -182.000000 210.853077 0 YOYS 90.000000 0.000000 -354.000000 118.737266 1 YOYS 0.000000 0.000000 -233.000000 169.285555 2 YOYS 0.000000 0.000000 -182.000000 210.853077 0 YOYS 90.000000 0.000000 -354.000000 118.737266 1 YOYS 0.000000 0.000000 -233.000000 169.285555 2 YOYS 0.000000 0.000000 -182.000000 210.853077 0 YOYS 90.000000 0.000000 -354.000000 118.737266 1


In the following, Setting at nm=1

Option -tn

tn=1

Input-1VOM-N-2D-FET.radon YOYS 0.000000 0.000000 -360.000000 1000.000000 0 
Input-1VOM-N-2D1-FET.radon YOYS 0.000000 0.000000 -360.000000 1000.000000 0 
Input-1VOM-N-Rot2-2D-FET.radon YOYS 90.000000 0.000000 -354.000000 118.737266 1


Option -om

om=0

Input-1VOM-N-2D-FET.radon YOYS 0.000000 0.000000 2.000000 dis 1000.000000 0
Input-1VOM-N-2D1-FET.radon YOYS 0.000000 0.000000 2.000000 dis 1000.000000 0
Input-1VOM-N-Rot2-2D-FET.radon YOYS 90.000000 0.000000 -354.000000 dis 118.737266 1


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