View source for mrcImageAreaCalc

'''mrcImageAreaCalc''' is [[Eos]]'s [[Command]] that calculate the area and volume using the image binarized.

== List of option ==
	<table border="1">
		<tr> 
			<th>Option</th> 
			<th>Essential/Optional</th> 
			<th>Description</th> 
			<th>Default</th> 
		</tr> 
		<tr> 
			<td>-i</td> 
			<td>Essential</td> 
			<td>Input: [[mrcImage]]</td> 
			<td>NULL</td> 
		</tr> 
		<tr> 
			<td>-o</td> 
			<td>Essential</td> 
			<td>Output: [[mrcImage]]</td> 
			<td>NULL</td> 
		</tr> 
		<tr> 
			<td>-O</td> 
			<td>Optional</td> 
			<td>Output the number of pixels of maximum area: [[ASCII]]</td> 
			<td>stdout</td> 
		</tr> 
		<tr> 
			<td>-l</td> 
			<td>Optional</td> 
			<td>Labeling: [[mrcImage]]</td> 
			<td>NULL</td> 
		</tr> 
		<tr> 
			<td>-h</td> 
			<td>Optional</td> 
			<td>Help</td> 
			<td>　</td> 
		</tr> 
	</table> 


== Execution example ==
=== Input file's image ===
	<table> 
		<tr> 
			<td>[[File:B120-mrcImageAreaCalc.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">0<br> 
				65.5929<br> 
				5.45036<br> 
				12.3043<br> 
				0.153804<br></p> 
			</td> 
			<td>Using the image binarized<br> 
				　　－－－－－－＞</td> 
			<td>[[File:Bin.m0t45-mrcImageAreaCalc.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">0<br> 
				1<br> 
				0.0220312<br> 
				0.146785<br> 
				0.00183481<br></p> 
			</td> 
		</tr> 
	</table> 
	
===Output -o===
	<table> 
		<tr> 
			<td>[[File:A.labe.binm0t45-mrcImageAreaCalc.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">0<br> 
				107<br> 
				1.85047<br> 
				13.7374<br> 
				0.00183481<br></p> 
			</td> 
			<td>*Set region of maximum area to 1. <br>
				And set other to the ratio of its region. </td> 
		</tr> 
	</table> 
	
===Option -O===
			Specify the output destination in the options as follows.<br> 
			In this case, "a.bin.m0t45.center.info2" is the destination.<br> 
			<br> 
			In terms of using cat command this destination.<br> 
<pre>
MaxRegion: 107.000000 
</pre>
			The number of pixels of the area of maximum is out as described above.<br> 
 
===Option -l=== 
			have the same functionality as [[mrcImageLabeling]].<br> 
			*Output destination is the destination specified in the option -I.

	<table> 
		<tr> 
			<td>[[File:Outdata2-mrcImageAreaCalc.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">0<br> 
				9<br> 
				0.0596875<br> 
				0.603272<br> 
				0.0075409<br></p> 
			</td> 
		</tr> 
	</table>