View source for mrcImageConnectivityNumberCalc

'''mrcImageConnectivityNumberCalc''' is [[Eos]]'s [[Command]] that calculates connectivity number.

== List of option ==
=== Main option ===
		<table border="1">
			<div align="left">
			<tr>
				<th>Option</th>
				<th>Essential/Optional</th>
				<th>Description</th>
				<th>Default</th>
			</tr>
			<tr>
				<td>-i</td>
				<td>Essential</td>
				<td>Input: [[mrcImage]]</td>
				<td>NULL</td>
			</tr>
			<tr>
				<td>-o</td>
				<td>Essential</td>
				<td>Output: [[mrcImage]]</td>
				<td>NULL</td>
			</tr>
			<tr>
				<td>-m</td>
				<td>Optional</td>
				<td>Mode</td>
				<td>0</td>
			</tr>
			<tr>
				<td>-f</td>
				<td>Optional</td>
				<td>Form</td>
				<td>0</td>
			</tr>
			<tr>
				<td>-I</td>
				<td>Optional</td>
				<td>Invers</td>
				<td>0</td>
			</tr>
			<tr>
				<td>-h</td>
				<td>Optional</td>
				<td>Help</td>
				<td>　</td>
			</tr>
			</div>
		</table>

=== -m details ===
	<table border="1">
		<div align="left">
			<tr>
				<th>Value</th>
				<th>Description</th>
			</tr>
			<tr>
				<td>0</td>
				<td>Four Neighborhood. [default]</td>
			</tr>
			<tr>
				<td>1</td>
				<td>Eight Nieghborhood.</td>
			</tr>
			<tr>
				<td>2</td>
				<td>Eighteen Neighborhood.</td>
			</tr>
		</div>
	</table>
<div>*0, 1: for 2-Dimension, 2: for 3-Dimension</div>

===-f details===
	<table border="1">
		<div align="left">
			<tr>
				<th>Value</th>
				<th>Description</th>
			</tr>
			<tr>
				<td>0</td>
				<td>No change. [default]</td>
			</tr>
			<tr>
				<td>1</td>
				<td>Spread of pixel data 1.</td>
			</tr>
			<tr>
				<td>2</td>
				<td>Thin of pixel data 1.</td>
			</tr>
			<tr>
				<td>3</td>
				<td>Frame of image by data 1.</td>
			</tr>
		</div>
	</table>

===-I details===
	<table border="1">
		<div align="left">
			<tr>
				<th>Value</th>
				<th>Description</th>
			</tr>
			<tr>
				<td>0</td>
				<td>The object is 1 value. [default]</td>
			</tr>
			<tr>
				<td>1</td>
				<td>The background is 1 value.</td>
			</tr>
		</div>
	</table>


==Execution example==
===------Input file's image------===
<div>Using the binary image as input file.</div>
	<table>
		<tr>
			<td>[[File:Bin.m0t1-MrcImageConnectivityNumberCalc.png]]</td>
			<td><p align="left">Min<br>
				Max<br>
				Mean<br>
				SD<br>
				SE<br></p>
			</td>
			<td><p align="left">0<br>
				1<br>
				0.236406<br>
				0.424874<br>
				0.00531093<br></p>
			</td>
		</tr>
	</table>

===------Option -f------===
====Case: f=0====
	<table>
		<tr>
			<td>[[File:Outdata-bin-MrcImageConnectivityNumberCalc.png]]</td>
			<td><p align="left">Min<br>
				Max<br>
				Mean<br>
				SD<br>
				SE<br></p>
			</td>
			<td><p align="left">0<br>
				1<br>
				0.236406<br>
				0.424874<br>
				0.00531093<br></p>
			</td>
		</tr>
	</table>

====Case: f=1====
	<table>
		<tr>
			<td>[[File:Outdata-bin-f1-MrcImageConnectivityNumberCalc.png]]</td>
			<td><p align="left">Min<br>
				Max<br>
				Mean<br>
				SD<br>
				SE<br></p>
			</td>
			<td><p align="left">0<br>
				1<br>
				0.260937<br>
				0.439146<br>
				0.00548932<br></p>
			</td>
		</tr>
	</table>

====Case: f=2====
	<table>
		<tr>
			<td>[[File:Outdata-bin-f2-MrcImageConnectivityNumberCalc.png]]</td>
			<td><p align="left">Min<br>
				Max<br>
				Mean<br>
				SD<br>
				SE<br></p>
			</td>
			<td><p align="left">0<br>
				1<br>
				0.203281<br>
				0.40244<br>
				0.0050305<br></p>
			</td>
		</tr>
	</table>

====Case: f=3====
	<table>
		<tr>
			<td>[[File:Outdata-bin-f3-MrcImageConnectivityNumberCalc.png]]</td>
			<td><p align="left">Min<br>
				Max<br>
				Mean<br>
				SD<br>
				SE<br></p>
			</td>
			<td><p align="left">0<br>
				1<br>
				0.03375<br>
				0.180585<br>
				0.00225731<br></p>
			</td>
		</tr>
	</table>

===------Option -I------===
====Case: I=0====
	<table>
		<tr>
			<td>[[File:Outdata-bin-MrcImageConnectivityNumberCalc.png]]</td>
			<td><p align="left">Min<br>
				Max<br>
				Mean<br>
				SD<br>
				SE<br></p>
			</td>
			<td><p align="left">0<br>
				1<br>
				0.236406<br>
				0.424874<br>
				0.00531093<br></p>
			</td>
		</tr>
	</table>

====Case: I=1====
	<table>
		<tr>
			<td>[[File:Outdata-bin-I1-MrcImageConnectivityNumberCalc.png]]</td>
			<td><p align="left">Min<br>
				Max<br>
				Mean<br>
				SD<br>
				SE<br></p>
			</td>
			<td><p align="left">0<br>
				1<br>
				0.763594<br>
				0.424874<br>
				0.00531093<br></p>
			</td>
		</tr>
	</table>

===------Option -m------===
====Case: f=1====
=====Case: m=0=====
	<table>
		<tr>
			<td>[[File:Outdata-bin-f1-MrcImageConnectivityNumberCalc.png]]</td>
			<td><p align="left">Min<br>
				Max<br>
				Mean<br>
				SD<br>
				SE<br></p>
			</td>
			<td><p align="left">0<br>
				1<br>
				0.260937<br>
				0.439146<br>
				0.00548932<br></p>
			</td>
		</tr>
	</table>

=====Case: m=1=====
	<table>
		<tr>
			<td>[[File:Outdata-bin-m1f1-MrcImageConnectivityNumberCalc.png]]</td>
			<td><p align="left">Min<br>
				Max<br>
				Mean<br>
				SD<br>
				SE<br></p>
			</td>
			<td><p align="left">0<br>
				1<br>
				0.271094<br>
				0.439146<br>
				0.00548932<br></p>
			</td>
		</tr>
	</table>

<div>m=2 is for 3D image. It doesn't effect  this time, because the image is 2D image.</div>