View source for mrcImageFFTLayerLineExtraction

'''mrcImageFFTLayerLineExtraction''' is [[Eos]]'s [[Command]].


== List of option ==
=== Main option ===
		<table border="1">
			<tr> 
				<th>Option</th> 
				<th>Essential/Optional</th> 
				<th>Description</th> 
				<th>Default</th> 
			</tr> 
			<tr> 
				<td>-i</td> 
				<td>Essential</td> 
				<td>Input: [[mrcImage]](FFT)</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-I</td> 
				<td>Optional</td> 
				<td>Input: [[ASCII]]</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-o</td> 
				<td>Essential</td> 
				<td>Output: [[mrcImage]](FFT)</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-turePitch</td> 
				<td>Optional</td> 
				<td>true Pitch: [A]</td> 
				<td>430</td> 
			</tr> 
			<tr> 
				<td>-c</td> 
				<td>Optional</td> 
				<td>ConfigurationFile</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-m</td> 
				<td>Optional</td> 
				<td>Mode</td> 
				<td>0</td> 
			</tr> 
			<tr> 
				<td>-h</td> 
				<td>Optional</td> 
				<td>Help</td> 
				<td>　</td> 
			</tr> 
		</table> 

=== -m details ===
		<table border="1">
			<tr> 
				<th>Value</th> 
				<th>Description</th> 
			</tr> 
			<tr> 
				<td>0</td> 
				<td></td> 
			</tr> 
		</table> 

===-I  format===
<pre>
FileName  x  z  dY 
</pre>
<div>-I option is stronger than -dY option.</div>


== Execution example ==
===[[Media:Input-B120.fft | Input file]] image===
	<table> 
		<tr> 
			<td>[[File:Input-B120-FFT.png]]</td> 
			<td><p align="left">Size<br> 
				Mode<br> 
				Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">(        80,         80,          1)<br> 
				mrcComplexFloatFT <br> 
				0.00776821 (75, 37, 0)<br> 
				1684.3 (0, 0, 0)<br> 
				9.41977<br> 
				61.1799<br> 
				0.764749<br></p> 
			</td> 
		</tr> 
	</table>
<br>

=== Option -I===
<div>-I 's data</div>
<pre>
a 0 0 2

</pre>
<br>
 
<div>Output</div>
<pre>
x        0.000000:  z        0.000000:  dY 2
maxdY : 40    maxdYcheck :       40.000000 
 dY:2
 inHeaderN.y:80,   inHeaderLength.y:       2.500000
outHeaderN.y:40,  outHeaderLength.y:       2.500000
</pre>
<br>

<div>-o 's image</div>
	<table> 
		<tr> 
			<td>[[File:Outdata-I-mrcImageFFTLayerLineExtraction.png]]</td> 
			<td><p align="left">Size<br> 
				Mode<br> 
				Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">(        80,         40,          1)<br> 
				mrcComplexFloatFT <br> 
				0.00776821 (75, 18, 0)<br> 
				1684.3 (0, 0, 0)<br> 
				9.54903<br> 
				61.2357<br> 
				1.0825<br></p> 
			</td> 
		</tr> 
	</table> 
<br>

=== Option -truePitch===
====Case: truePitch=50====
 
<div>Output</div>
<pre>
in dY 
x        0.000000:  z        0.000000:  dY 4
maxdY : 20    maxdYcheck :       20.000000 
 dY:4
 inHeaderN.y:80,   inHeaderLength.y:       2.500000
outHeaderN.y:20,  outHeaderLength.y:       2.500000
</pre>
<br>

<div>-o 's image</div>
	<table> 
		<tr> 
			<td>[[File:Outdata-truePitch-mrcImageFFTLayerLineExtraction.png]]</td> 
			<td><p align="left">Size<br> 
				Mode<br> 
				Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">(        80,         20,          1)<br> 
				mrcComplexFloatFT <br> 
				0.0233105 (78, 11, 0)<br> 
				1684.3 (0, 0, 0)<br> 
				10.5245<br> 
				75.9939<br> 
				1.89985<br></p> 
			</td> 
		</tr> 
	</table> 
<br>