View source for mrcImageOpening

'''mrcImageOpening''' is [[Eos]]'s [[Command]] that performs erosion and dilation by using Structuring Element.


== List of option ==
=== Main option ===
		<table border="1">
			<tr> 
				<th>Option</th> 
				<th>Essential/Optional</th> 
				<th>Description</th> 
				<th>Default</th> 
			</tr> 
			<tr> 
				<td>-i</td> 
				<td>Essential</td> 
				<td>Input: [[mrcImage]]</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-o</td> 
				<td>Essential</td> 
				<td>Output: [[mrcImage]]</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-oSE</td> 
				<td>Optional</td> 
				<td>Output: [[mrcImage]](SE)</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-SE</td> 
				<td>Optional</td> 
				<td>SE</td> 
				<td>0</td> 
			</tr> 
			<tr> 
				<td>-r</td> 
				<td>Optional</td> 
				<td>radius</td> 
				<td>2</td> 
			</tr> 
			<tr> 
				<td>-n</td> 
				<td>Optional</td> 
				<td>Size</td> 
				<td>5</td> 
			</tr> 
			<tr> 
				<td>-c</td> 
				<td>Optional</td> 
				<td>ConfigurationFile</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-m</td> 
				<td>Optional</td> 
				<td>Mode</td> 
				<td>0</td> 
			</tr> 
			<tr> 
				<td>-h</td> 
				<td>Optional</td> 
				<td>Help</td> 
				<td>　</td> 
			</tr> 
		</table> 

=== -m details ===
		<table border="1">
			<tr> 
				<th>Value</th> 
				<th>Description</th> 
			</tr> 
			<tr> 
				<td>0</td> 
				<td>2D Cross3x3:  4-neighbour</td> 
			</tr> 
			<tr> 
				<td>1</td> 
				<td>2D Square3x3: 8-neighbour</td> 
			</tr> 
			<tr> 
				<td>2</td> 
				<td>2D Open Disk , need (radius, n)</td> 
			</tr> 
			<tr> 
				<td>3</td> 
				<td>3D Cross3x3x3:   6-neighbour</td> 
			</tr> 
			<tr> 
				<td>4</td> 
				<td>3D Cubic3x3x3: 26-neighbour</td> 
			</tr> 
			<tr> 
				<td>5</td> 
				<td>3D Open Disk , need (radius, n)</td> 
			</tr> 
		</table> 


== Execution example ==
=== Input file's image ===
	<table> 
		<tr> 
			<td>[[File:Input-mrcImageOpening.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">0 (0, 0, 0)<br> 
				255 (49, 32, 0)<br> 
				21.0538<br> 
				47.6709<br> 
				0.595886<br></p> 
			</td> 
		</tr> 
	</table> 

=== Example of options only essential ===
====-o  image====
	<table> 
		<tr> 
			<td>[[File:Outdata-mrcImageOpening.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">0 (0, 0, 0)<br> 
				232 (36, 37, 0)<br> 
				20.4675<br> 
				46.1487<br> 
				0.576859<br></p> 
			</td> 
		</tr> 
	</table> 

====-oSE  image====
	<table> 
		<tr> 
			<td>[[File:Outdata2-mrcImageOpening.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">0 (0, 0, 0)<br> 
				1 (1, 0, 0)<br> 
				0.555556<br> 
				0.496904<br> 
				0.165635<br></p> 
			</td> 
		</tr> 
	</table> 

=== Option -SE===
====Case: SE=5==== 
=====-o  image=====
	<table> 
		<tr> 
			<td>[[File:Outdata-SE-mrcImageOpening.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">0 (0, 0, 0)<br> 
				209 (36, 37, 0)<br> 
				19.3409<br> 
				43.3924<br> 
				0.542405<br></p> 
			</td> 
		</tr> 
	</table>

=====-oSE  image=====
	<table> 
		<tr> 
			<td>[[File:Outdata2-SE-mrcImageOpening.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">0 (0, 0, 0)<br> 
				1 (2, 0, 0)<br> 
				0.52<br> 
				0.4996<br> 
				0.09992<br></p> 
			</td> 
		</tr> 
	</table>

=== Option -r===
====Case: r=10, SE=5==== 
=====-o  image=====
	<table> 
		<tr> 
			<td>[[File:Outdata-r-mrcImageOpening.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">0 (0, 0, 0)<br> 
				187 (34, 37, 0)<br> 
				18.4941<br> 
				41.497<br> 
				0.518712<br></p> 
			</td> 
		</tr> 
	</table>

=====-oSE  image=====
	<table> 
		<tr> 
			<td>[[File:Outdata2-r-mrcImageOpening.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">1 (0, 0, 0)<br> 
				1 (0, 0, 0)<br> 
				1<br> 
				0<br> 
				0<br></p> 
			</td> 
		</tr> 
	</table>

=== Option -n===
====Case: n=5, r=10, SE=5==== 
=====-o  image=====
	<table> 
		<tr> 
			<td>[[File:Outdata-n-mrcImageOpening.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">0 (0, 0, 0)<br> 
				220 (35, 37, 0)<br> 
				20.1072<br> 
				45.2781<br> 
				0.565976<br></p> 
			</td> 
		</tr> 
	</table>

=====-oSE  image=====
	<table> 
		<tr> 
			<td>[[File:Outdata2-n-mrcImageOpening.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">1 (0, 0, 0)<br> 
				1 (0, 0, 0)<br> 
				1<br> 
				0<br> 
				0<br></p> 
			</td> 
		</tr> 
	</table>