View source for mrcSinogramFET

'''mrcSinogramFET''' is [[Eos]]'s [[Command]] that calculates the Sinogram Features.


== List of option ==
=== Main option ===
		<table border="1">
			<tr> 
				<th>Option</th> 
				<th>Essential/Optional</th> 
				<th>Description</th> 
				<th>Default</th> 
			</tr> 
			<tr> 
				<td>-i</td> 
				<td>Essential</td> 
				<td>Input: [[mrcImage]](Sinogram)</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-o</td> 
				<td>Essential</td> 
				<td>Output: [[mrcImage]](FET)</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-ch</td> 
				<td>Optional</td> 
				<td>Output: [[mrcImage]](FET)(Normalized data)</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-sm</td> 
				<td>Optional</td> 
				<td>SmoothingFilter(move range of column smoothing by moving-average)</td> 
				<td>1</td> 
			</tr> 
			<tr> 
				<td>-c</td> 
				<td>Optional</td> 
				<td>ConfigurationFile</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-m</td> 
				<td>Optional</td> 
				<td>Mode</td> 
				<td>0</td> 
			</tr> 
			<tr> 
				<td>-h</td> 
				<td>Optional</td> 
				<td>Help</td> 
				<td>　</td> 
			</tr> 
		</table> 
<br>

=== -m details ===
		<table border="1">
			<tr> 
				<th>Value</th> 
				<th>Description</th> 
			</tr> 
			<tr> 
				<td>0</td> 
				<td></td> 
			</tr> 
		</table> 
<br>

===Output file format===
<div>It outputs the following from each θ of Sinogram/</div>
<pre>
Width  Skewness  Kurtosis
    .              .              .
    .              .              .
    .              .              .

</pre>
<div>The width is calculated from [[Kurtosis]] of [[Autocorrelation Value]] each θ.</div>
<br>

== Execution example ==
===[[:Media:Input-B120-sin.mrc | Input file]] image===
	<table> 
		<tr> 
			<td>[[File:Input-B120-sin.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">0 (0, 0, 0)<br> 
				65535 (77, 34, 0)<br> 
				22776.7<br> 
				23232.9<br> 
				136.901<br></p> 
			</td> 
		</tr> 
	</table> 
<br>

=== Example of options only essential ===
<div>-o 's file By [[mrcImageMakeDump]](m=8)</div>
<pre>
      0.0614942       0.0325917         1.78762 
      0.0605712       0.0632562         1.93108 
      0.0639257       0.0789107         1.95908 
      0.0634946      -0.0737892         2.01836 
      0.0608277        0.202078         1.89107 
      0.0542547        0.144344         1.85886 
      0.0521331         0.10485         1.82517 
      0.0616536       0.0753629          1.8386 
      0.0620365      0.00882033         1.76001 
      0.0609849       -0.178435          1.8612 

...

      0.0594001       0.0137078         1.69186 
      0.0641533      -0.0104053          1.8428 
      0.0666817      -0.0237231         1.73576 
      0.0679321        0.135993         1.93031 
      0.0616724       0.0270474         1.75367 
      0.0614942      -0.0325917         1.78763 
      0.0605712      -0.0632519         1.93109 
      0.0639255      -0.0789105         1.95908 
      0.0634947       0.0737856         2.01836 
      0.0608276       -0.202075         1.89107 

...

      0.0577482        -0.05145         1.85321 
      0.060355       0.0692867         1.93637 
      0.0553964       0.0399175         1.82433 
      0.0564827        0.121926         1.75859 
      0.0580604     -0.00824017         1.65152 
      0.0594001      -0.0137042         1.69186 
      0.0640352       0.0111142         1.84374 
      0.0664901       0.0239018         1.73636 
      0.0676839       -0.135384         1.93055 
      0.0616659      -0.0268808         1.75356 
</pre>
<table>
	<tr>
		<td><p align="center">[[File:Outdata-mrcSinogramFET.png]]<br>
			By gnuplot(Width)<br></p>
		</td>
		<td><p align="center">[[File:Outdata1-mrcSinogramFET.png]]<br>
			By gnuplot(Skewness)<br></p>
		</td>
		<td><p align="center">[[File:Outdata2-mrcSinogramFET.png]]<br>
			By gnuplot(Kurtosis)<br></p>
		</td>
	</tr>
</table>
<br>

<div>-ch 's file By [[mrcImageMakeDump]](m=8)</div>
<pre>
      -0.152068        0.261573        -0.50104 
      -0.224789        0.537886        0.937449 
      0.0395039        0.678946          1.2182 
     0.00553877       -0.697009         1.81255 
      -0.204582         1.78879        0.536229 
      -0.722448         1.26855        0.213237 
      -0.889606        0.912684       -0.124537 
      -0.139506        0.646977         0.01011 
      -0.109342       0.0473727       -0.777902 
      -0.192197        -1.63996        0.236728 


...

      -0.546908        -1.13077       -0.792131 
       -0.42261       0.0421458        -1.86576 
       -0.31706        0.091413        -1.46124 
      0.0574377       -0.125866       0.0522004 
       0.256643       -0.245871        -1.02104 
       0.355158         1.19331        0.929678 
      -0.138031        0.211614       -0.841446 
      -0.152069       -0.325784       -0.501014 
      -0.224792       -0.602058        0.937471 
      0.0394892       -0.743156         1.21819 


...

      -0.447208       -0.495713        0.156582 
      -0.241819        0.592226        0.990494 
      -0.632502        0.327584        -0.13293 
      -0.546909         1.06655       -0.792107 
      -0.422611       -0.106357        -1.86577 
      -0.317057       -0.155592        -1.46122 
      0.0481348       0.0680422       0.0616421 
       0.241547        0.183269        -1.01502 
       0.335601        -1.25203        0.932057 
       -0.13854       -0.274324       -0.842582 
</pre>
<table>
	<tr>
		<td><p align="center">[[File:Outdata3-mrcSinogramFET.png]]<br>
			By gnuplot(Width)<br></p>
		</td>
		<td><p align="center">[[File:Outdata4-mrcSinogramFET.png]]<br>
			By gnuplot(Skewness)<br></p>
		</td>
		<td><p align="center">[[File:Outdata5-mrcSinogramFET.png]]<br>
			By gnuplot(Kurtosis)<br></p>
		</td>
	</tr>
</table>
These data and graphs show easily that -ch data is normalized -o data.
<br>

=== Option -sm===
====Case: sm=2==== 
<div>-o 's file By [[mrcImageMakeDump]](m=8)</div>
<pre>
      0.0918657       0.0344836         2.73613 
      0.0913183       0.0795521          2.8249 
      0.0925341        0.102712         2.91063 
      0.0939957       0.0341889         2.95426 
      0.0924467       0.0957727         2.92026 
      0.0878268        0.204839         2.84051 
      0.0834795        0.156225         2.80756 
       0.087179        0.121735         2.79743 
      0.0921307       0.0737197         2.76485 
      0.0917963      -0.0531793         2.77615 

...

      0.0890158       0.0426021         2.63723 
      0.0920623       0.0332794         2.73287 
      0.0957031       0.0145639         2.75482 
      0.0975925       0.0877632         2.79858 
      0.0950878        0.113149         2.80753 
      0.0918689        0.028856         2.73619 
      0.0913183      -0.0162937          2.8249 
      0.0925339      -0.0394531         2.91063 
      0.0939957       0.0290656         2.95426 
      0.0924467      -0.0325166         2.92026 

...

      0.0912556      -0.0290791         2.76966 
      0.0906757      -0.0484107         2.77224 
      0.0893372       0.0405465         2.86033 
      0.0881613       0.0862302          2.8459 
      0.0862251         0.11255         2.75701 
      0.0875571       0.0884708          2.6706 
      0.0890158       0.0206559         2.63723 
      0.0920033       0.0303331         2.73334 
      0.0955483       0.0491361         2.75559 
      0.0973726       -0.024113           2.799 
      0.0949605      -0.0495043          2.8076 
</pre>
<table>
	<tr>
		<td><p align="center">[[File:Outdata-sm2-mrcSinogramFET.png]]<br>
			By gnuplot(Width)<br></p>
		</td>
		<td><p align="center">[[File:Outdata1-sm2-mrcSinogramFET.png]]<br>
			By gnuplot(Skewness)<br></p>
		</td>
		<td><p align="center">[[File:Outdata2-sm2-mrcSinogramFET.png]]<br>
			By gnuplot(Kurtosis)<br></p>
		</td>
	</tr>
</table>
<br>

<div>-ch 's file By [[mrcImageMakeDump]](m=8)</div>
<pre>
      -0.147819     -0.00778411       -0.845133 
      -0.191689        0.488046        0.274498 
     -0.0942456         0.74284         1.35589 
      0.0229111      -0.0110267         1.90633 
      -0.101244        0.666501         1.47737 
      -0.471537         1.86642        0.471413 
      -0.819977         1.33158       0.0557929 
      -0.523461        0.952127      -0.0719755 
      -0.126578         0.42388        -0.48294 
      -0.153379       -0.972225       -0.340396 

...

      -0.599897       -0.929452       -0.581873 
      -0.493149       -0.664574         -1.6718 
      -0.376236       0.0815337        -2.09267 
      -0.132058      -0.0210327       -0.886283 
       0.159758       -0.226934         -0.6094 
       0.311195        0.578382      -0.0574679 
       0.110442        0.857664       0.0554982 
      -0.147561      -0.0696975       -0.844402 
      -0.191692        -0.56642        0.274529 
     -0.0942552       -0.821213          1.3559 
      0.0229063      -0.0673908         1.90632 

...

      -0.243192       -0.919762       -0.389729 
      -0.350475       0.0589178        0.721506 
      -0.444726        0.561517        0.539406 
      -0.599912        0.851075       -0.581846 
       -0.49315        0.586167         -1.6718 
      -0.376234       -0.159912        -2.09267 
      -0.136788      -0.0534466       -0.880331 
       0.147347        0.153418       -0.599668 
       0.293568       -0.652446      -0.0521809 
       0.100236       -0.931793       0.0562801 
</pre>
<table>
	<tr>
		<td><p align="center">[[File:Outdata3-sm2-mrcSinogramFET.png]]<br>
			By gnuplot(Width)<br></p>
		</td>
		<td><p align="center">[[File:Outdata4-sm2-mrcSinogramFET.png]]<br>
			By gnuplot(Skewness)<br></p>
		</td>
		<td><p align="center">[[File:Outdata5-sm2-mrcSinogramFET.png]]<br>
			By gnuplot(Kurtosis)<br></p>
		</td>
	</tr>
</table>
<br>