Kinoshita: Created page with "'''Resolution analysis''' is Integration Command for analysis of 3D image's resolution. == Fourier Shell Correlation == If you have .3dlst file, it is divided 2 groups at ra..."

2014-07-25T07:35:33Z

Created page with "'''Resolution analysis''' is Integration Command for analysis of 3D image's resolution. == Fourier Shell Correlation == If you have .3dlst file, it is divided 2 groups at ra..."

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'''Resolution analysis''' is Integration Command for analysis of 3D image's resolution.

== Fourier Shell Correlation ==
If you have .3dlst file, it is divided 2 groups at random as the following, and you can calculate FSC by using Integration Command for analysis of 3D image.

NSEED=0

.3dlst.3dFSC:
awk 'BEGIN {srand($(NSEED))} { printf("%10.7f %s\n", rand(), $$0); }' $*.3dlst \
| sort \　
| awk '{ printf("%s %s %15.6f %15.6f %15.6f %15.6f\n", $$2,$$3,$$4,$$5,$$6,$$7)}' \
> $*.3dlst.sort
N1=`wc -l $*.3dlst.sort | awk '{print int($$1/2)}'`; echo $$N1; \
N2=`wc -l $*.3dlst.sort | awk '{print $$1-int($$1/2)}'`; echo $$N2; \
head -n $$N1 $*.3dlst.sort > $*.1.3dlst; \
tail -n $$N2 $*.3dlst.sort > $*.2.3dlst
printf "%s\n%s\n" $*.1.3d $*.2.3d | xargs -L 1 -P 2 make
mrcImageFourierShellCorrelation -i1 $*.1.3d -i2 $*.2.3d -d $(DelR) > $*.3dFSC

Resolution analysis - Revision history

Kinoshita: Created page with "'''Resolution analysis''' is Integration Command for analysis of 3D image's resolution. == Fourier Shell Correlation == If you have .3dlst file, it is divided 2 groups at ra..."