WeightCalculationOfCommonLineSearchByAllSinogram - Revision history

Kinoshita: /* -M details */

2014-09-02T00:18:11Z

‎-M details

Kinoshita: /* -i1, -12, -i3, -i4 format */

2014-08-18T07:24:45Z

‎-i1, -12, -i3, -i4 format

Kinoshita: /* -M details */

2014-08-18T07:21:00Z

‎-M details

Kinoshita: /* Main option */

2014-08-18T07:17:02Z

‎Main option

Kinoshita: Created page with "'''WeightCalculationOfCommonLineSearchByAllSinogram''' is Eos's Command. == List of option == === Main option === ..."
2014-08-18T07:14:14Z
Created page with "'''WeightCalculationOfCommonLineSearchByAllSinogram''' is Eos's Command. == List of option == === Main option === <table border="1"> <tr> <th>Option</th>..."
New page
'''WeightCalculationOfCommonLineSearchByAllSinogram''' is [[Eos]]'s [[Command]].

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-In1</td>
<td>Optional</td>
<td>Inputリスト1: [[ASCII]](正規相関)</td>
<td>NULL</td>
</tr>
<tr>
<td>-In2</td>
<td>Optional</td>
<td>Inputリスト2: [[ASCII]](1次元微分相関)</td>
<td>NULL</td>
</tr>
<tr>
<td>-In3</td>
<td>Optional</td>
<td>Inputリスト3: [[ASCII]](2次元微分相関)</td>
<td>NULL</td>
</tr>
<tr>
<td>-In4</td>
<td>Optional</td>
<td>Inputリスト4: [[ASCII]](相関長)</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[ASCII]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-M</td>
<td>Optional</td>
<td>使用する相関fileの組み合わせ</td>
<td>15</td>
</tr>
<tr>
<td>-v</td>
<td>Optional</td>
<td>variance of Gaussian weight function</td>
<td>5</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>
<br>

===-m details===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>get memory of mrcImage </td>
</tr>
<tr>
<td>1</td>
<td>don't get memory of mrcImage </td>
</tr>
</table>
<br>

===-M details===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>+1</td>
<td>-In1 を使用</td>
</tr>
<tr>
<td>+2</td>
<td>-In2 を使用</td>
</tr>
<tr>
<td>+4</td>
<td>-In3 を使用</td>
</tr>
<tr>
<td>+8</td>
<td>-In4 を使用</td>
</tr>
<tr>
<td>15</td>
<td>全てのInput fileを使用</td>
</tr>
</table>
<div>2つ以上のModeを組み合わせて使用する</div>
<br>

===-i1, -12, -i3, -i4 format===
<pre>
相関file mrcfile1 mrcfile2 Rot1 Rot2 Mode
. . . . . .
. . . . . .

</pre>
<div>相関fileはリストと同じディレクトリにあることを想定している</div>
<div>file構成については[[mrcImagesSinogramCorrelation]]を参照</div>
<br>

== Execution example ==
===[[Media:Input-1VOM-SinCor.zip|Input file]] data===
====-i1 data====
<pre>
Input-1VOM-2D-sin_Input-1VOM-Rot-2D-sin.Normal.cor Input-1VOM-2D-sin.mrc Input-1VOM-Rot-2D-sin.mrc 1.570796 1.570796 1
Input-1VOM-2D-sin_Input-1VOM-Rot1-2D-sin.Normal.cor Input-1VOM-2D-sin.mrc Input-1VOM-Rot1-2D-sin.mrc 0.000000 0.000000 z-rotation
Input-1VOM-Rot-2D-sin_Input-1VOM-Rot1-2D-sin.Normal.cor Input-1VOM-Rot-2D-sin.mrc Input-1VOM-Rot1-2D-sin.mrc 1.570796 1.570796 1
</pre>
<br>

<div>Input-1VOM-2D-sin_Input-1VOM-Rot-2D-sin.Normal.cor</div>
<table>
<tr>
<td>[[File:Input-1VOM-SinCor1-1.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.925733 (174, 223, 0)<br>
0.986152 (271, 281, 0)<br>
0.203463<br>
0.411921<br>
0.00114423<br></p>
</td>
</tr>
</table>
<br>

<div>Input-1VOM-2D-sin_Input-1VOM-Rot3-2D-sin.Normal.cor</div>
<table>
<tr>
<td>[[File:Input-1VOM-SinCor1-2.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.969656 (10, 168, 0)<br>
0.96977 (10, 357, 0)<br>
0.199734<br>
0.487223<br>
0.0013534<br></p>
</td>
</tr>
</table>
<br>

<div>Input-1VOM-Rot-2D-sin_Input-1VOM-Rot3-2D-sin.Normal.cor</div>
<table>
<tr>
<td>[[File:Input-1VOM-SinCor1-3.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.79716 (206, 183, 0)<br>
0.986575 (190, 120, 0)<br>
0.251101<br>
0.368028<br>
0.0010223<br></p>
</td>
</tr>
</table>
<br>

====-i2 data====
<pre>
Input-1VOM-2D-sin_Input-1VOM-Rot-2D-sin.Derivation1D.cor Input-1VOM-2D-sin.mrc Input-1VOM-Rot-2D-sin.mrc 1.570796 1.570796 1
Input-1VOM-2D-sin_Input-1VOM-Rot1-2D-sin.Derivation1D.cor Input-1VOM-2D-sin.mrc Input-1VOM-Rot1-2D-sin.mrc 0.000000 0.000000 z-rotation
Input-1VOM-Rot-2D-sin_Input-1VOM-Rot1-2D-sin.Derivation1D.cor Input-1VOM-Rot-2D-sin.mrc Input-1VOM-Rot1-2D-sin.mrc 1.570796 1.570796 1

</pre>
<br>

<div>Input-1VOM-2D-sin_Input-1VOM-Rot-2D-sin.Derivation1D.cor</div>
<table>
<tr>
<td>[[File:Input-1VOM-SinCor2-1.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.999642 (131, 329, 0)<br>
0.921779 (132, 73, 0)<br>
0.0604004<br>
0.241042<br>
0.00066956<br></p>
</td>
</tr>
</table>
<br>

<div>Input-1VOM-2D-sin_Input-1VOM-Rot3-2D-sin.Derivation1D.cor</div>
<table>
<tr>
<td>[[File:Input-1VOM-SinCor2-2.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.995358 (132, 121, 0)<br>
0.991247 (133, 4, 0)<br>
0.0859721<br>
0.247723<br>
0.000688118<br></p>
</td>
</tr>
</table>
<br>

<div>Input-1VOM-Rot-2D-sin_Input-1VOM-Rot3-2D-sin.Derivation1D.cor</div>
<table>
<tr>
<td>[[File:Input-1VOM-SinCor2-3.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.98175 (356, 217, 0)<br>
0.97865 (0, 217, 0)<br>
0.0731451<br>
0.245175<br>
0.000681042<br></p>
</td>
</tr>
</table>
<br>

====-i3 data====
<pre>
Input-1VOM-2D-sin_Input-1VOM-Rot-2D-sin.Derivation2D.cor Input-1VOM-2D-sin.mrc Input-1VOM-Rot-2D-sin.mrc 1.570796 1.570796 1
Input-1VOM-2D-sin_Input-1VOM-Rot1-2D-sin.Derivation2D.cor Input-1VOM-2D-sin.mrc Input-1VOM-Rot1-2D-sin.mrc 0.000000 0.000000 z-rotation
Input-1VOM-Rot-2D-sin_Input-1VOM-Rot1-2D-sin.Derivation2D.cor Input-1VOM-Rot-2D-sin.mrc Input-1VOM-Rot1-2D-sin.mrc 1.570796 1.570796 1

</pre>
<br>

<div>Input-1VOM-2D-sin_Input-1VOM-Rot-2D-sin.Derivation2D.cor</div>
<table>
<tr>
<td>[[File:Input-1VOM-SinCor3-1.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-1 (285, 75, 0)<br>
1 (285, 61, 0)<br>
nan<br>
nan<br>
nan<br></p>
</td>
</tr>
</table>
<br>

<div>Input-1VOM-2D-sin_Input-1VOM-Rot3-2D-sin.Derivation2D.cor</div>
<table>
<tr>
<td>[[File:Input-1VOM-SinCor3-2.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-1 (158, 33, 0)<br>
1 (158, 30, 0)<br>
0.0945901<br>
0.227151<br>
0.000630976<br></p>
</td>
</tr>
</table>
<br>

<div>Input-1VOM-Rot-2D-sin_Input-1VOM-Rot3-2D-sin.Derivation2D.cor</div>
<table>
<tr>
<td>[[File:Input-1VOM-SinCor3-3.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.970911 (132, 30, 0)<br>
1 (135, 30, 0)<br>
0.104829<br>
0.220026<br>
0.000611183<br></p>
</td>
</tr>
</table>
<br>

====-i4 data====
<pre>
Input-1VOM-2D-sin_Input-1VOM-Rot-2D-sin.Length.cor Input-1VOM-2D-sin.mrc Input-1VOM-Rot-2D-sin.mrc 1.570796 1.570796 1
Input-1VOM-2D-sin_Input-1VOM-Rot1-2D-sin.Length.cor Input-1VOM-2D-sin.mrc Input-1VOM-Rot1-2D-sin.mrc 0.000000 0.000000 z-rotation
Input-1VOM-Rot-2D-sin_Input-1VOM-Rot1-2D-sin.Length.cor Input-1VOM-Rot-2D-sin.mrc Input-1VOM-Rot1-2D-sin.mrc 1.570796 1.570796 1

</pre>
<br>

<div>Input-1VOM-2D-sin_Input-1VOM-Rot-2D-sin.Length.cor</div>
<table>
<tr>
<td>[[File:Input-1VOM-SinCor4-1.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0.778626 (27, 38, 0)<br>
1 (27, 0, 0)<br>
0.946219<br>
0.047809<br>
0.000132803<br></p>
</td>
</tr>
</table>
<br>

<div>Input-1VOM-2D-sin_Input-1VOM-Rot3-2D-sin.Length.cor</div>
<table>
<tr>
<td>[[File:Input-1VOM-SinCor4-2.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0.699187 (27, 191, 0)<br>
1 (0, 0, 0)<br>
0.93032<br>
0.0611702<br>
0.000169917<br></p>
</td>
</tr>
</table>
<br>

<div>Input-1VOM-Rot-2D-sin_Input-1VOM-Rot3-2D-sin.Length.cor</div>
<table>
<tr>
<td>[[File:Input-1VOM-SinCor4-3.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0.699187 (0, 191, 0)<br>
1 (67, 0, 0)<br>
0.93353<br>
0.0580325<br>
0.000161201<br></p>
</td>
</tr>
</table>
<br>

=== Case: Options only essential ===
<div>Output</div>
<pre>
Input data get end : CommonLinePositionData
Input data get end : CommonLinePositionData
Input data get end : CommonLinePositionData
Input data get end : CommonLinePositionData
weight calculation start

deltaweight = 1.414214
FinalCorrelationMin = 10.000000
weight[0][1.414214, 8.000000] >>>> weightMinOfCorrelation = 0.000000
weight[1][1.414214, 8.000000] >>>> weightMinOfCorrelation = 0.000000
weight[2][1.414214, 8.000000] >>>> weightMinOfCorrelation = 0.000000
weight[3][1.414214, 8.000000] >>>> weightMinOfCorrelation = 0.000000

deltaweight = 1.189207
FinalCorrelationMin = 3.000000
weight[0][0.000000, 0.000000] >>>> weightMinOfCorrelation = 0.000000
weight[1][0.000000, 0.000000] >>>> weightMinOfCorrelation = 0.000000
weight[2][0.000000, 0.000000] >>>> weightMinOfCorrelation = 0.000000
weight[3][0.000000, 0.000000] >>>> weightMinOfCorrelation = 0.000000

deltaweight = 1.090508
FinalCorrelationMin = 3.000000
weight[0][0.000000, 0.000000] >>>> weightMinOfCorrelation = 0.000000
weight[1][0.000000, 0.000000] >>>> weightMinOfCorrelation = 0.000000
weight[2][0.000000, 0.000000] >>>> weightMinOfCorrelation = 0.000000
weight[3][0.000000, 0.000000] >>>> weightMinOfCorrelation = 0.000000

...

deltaweight = 1.000000
FinalCorrelationMin = 3.000000
weight[0][0.000000, 0.000000] >>>> weightMinOfCorrelation = 0.000000
weight[1][0.000000, 0.000000] >>>> weightMinOfCorrelation = 0.000000
weight[2][0.000000, 0.000000] >>>> weightMinOfCorrelation = 0.000000
weight[3][0.000000, 0.000000] >>>> weightMinOfCorrelation = 0.000000

deltaweight = 1.000000
FinalCorrelationMin = 3.000000
weight[0][0.000000, 0.000000] >>>> weightMinOfCorrelation = 0.000000
weight[1][0.000000, 0.000000] >>>> weightMinOfCorrelation = 0.000000
weight[2][0.000000, 0.000000] >>>> weightMinOfCorrelation = 0.000000
weight[3][0.000000, 0.000000] >>>> weightMinOfCorrelation = 0.000000
</pre>
<br>

<div>-o 's data</div>
<pre>
Weight of I1 is 0.000000
Weight of I2 is 0.000000
Weight of I3 is 0.000000
Weight of I4 is 0.000000
</pre>
<br>

=== Option -M===
====Case: M=3====
=====Case: No other settings=====
<pre>
Weight of I1 is 0.771105
Weight of I2 is 3.459215
</pre>
<br>

=====Case: v=1=====
<pre>
Weight of I1 is 0.840896
Weight of I2 is 3.772301
</pre>
<br>

=====Case: m=1=====
<div>Output</div>
<pre>
Input data get end : CommonLinePositionData
Input data get end : CommonLinePositionData
weight calculation start

deltaweight = 1.414214
FinalCorrelationMin = 2.628996
weight[0][1.414214, 8.000000] >>>> weightMinOfCorrelation = 1.414214
weight[1][1.414214, 8.000000] >>>> weightMinOfCorrelation = 7.071068

deltaweight = 1.189207
FinalCorrelationMin = 2.616069
weight[0][1.000000, 2.000000] >>>> weightMinOfCorrelation = 1.000000
weight[1][5.000000, 10.000000] >>>> weightMinOfCorrelation = 9.756828

deltaweight = 1.090508
FinalCorrelationMin = 2.612862
weight[0][0.840896, 1.189207] >>>> weightMinOfCorrelation = 0.840896
weight[1][8.204482, 11.602890] >>>> weightMinOfCorrelation = 11.476005

...

deltaweight = 1.000000
FinalCorrelationMin = 2.612196
weight[0][0.771105, 0.771105] >>>> weightMinOfCorrelation = 0.771105
weight[1][11.567817, 11.567817] >>>> weightMinOfCorrelation = 11.567817

deltaweight = 1.000000
FinalCorrelationMin = 2.612196
weight[0][0.771105, 0.771105] >>>> weightMinOfCorrelation = 0.771105
weight[1][11.567817, 11.567817] >>>> weightMinOfCorrelation = 11.567817

deltaweight = 1.000000
FinalCorrelationMin = 2.612196
weight[0][0.771105, 0.771105] >>>> weightMinOfCorrelation = 0.771105
weight[1][11.567817, 11.567817] >>>> weightMinOfCorrelation = 11.567817
</pre>
<br>

<div>-o 's data</div>
<pre>
Weight of I1 is 0.771105
Weight of I2 is 11.567817
</pre>
<br>

====Case: M=5====
<pre>
Weight of I1 is 0.000000
Weight of I2 is 0.000000
</pre>
<br>

====Case: M=6====
<pre>
Weight of I1 is 0.000000
Weight of I2 is 0.000000
</pre>
<br>

====Case: M=7====
<pre>
Weight of I1 is 0.000000
Weight of I2 is 0.000000
Weight of I3 is 0.000000
</pre>
<br>

====Case: M=9====
<pre>
Weight of I1 is 0.840327
Weight of I2 is 3.769748
</pre>
<br>

====Case: M=10====
<pre>
Weight of I1 is 0.840327
Weight of I2 is 3.769748
</pre>
<br>

====Case: M=11====
<pre>
Weight of I1 is 0.766941
Weight of I2 is 0.766941
Weight of I3 is 11.505344
</pre>
<br>

====Case: M=12====
<pre>
Weight of I1 is 0.000000
Weight of I2 is 0.000000
</pre>
<br>

====Case: M=13====
<pre>
Weight of I1 is 0.000000
Weight of I2 is 0.000000
Weight of I3 is 0.000000
</pre>
<br>

====Case: M=14====
<pre>
Weight of I1 is 0.766941
Weight of I2 is 0.766941
Weight of I3 is 11.505344
</pre>
<br>

Option