clusterShow - Revision history

Kinoshita: Created page with "'''clusterShow''' is Eos's Command that creates dendrogram of Cluster Analysis about files. == List of option == === Main option === ..."
2014-08-19T01:17:04Z
Created page with "'''clusterShow''' is Eos's Command that creates dendrogram of Cluster Analysis about files. == List of option == === Main option === <table border="1"> <tr>..."
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'''clusterShow''' is [[Eos]]'s [[Command]] that creates dendrogram of [[Cluster Analysis]] about files.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Optional</td>
<td>Input: [[ASCII]](Log)(All)</td>
<td>NULL</td>
</tr>
<tr>
<td>-i2</td>
<td>Optional</td>
<td>Input2: [[ASCII]](Log)(Node only)</td>
<td>NULL</td>
</tr>
<tr>
<td>-ib</td>
<td>Optional</td>
<td>BinaryLogFileName(Base)</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Optional</td>
<td>Output: [[ASCII]](All)</td>
<td>stdout</td>
</tr>
<tr>
<td>-O</td>
<td>Optional</td>
<td>Output: [[ASCII]](Node only)</td>
<td>stdout</td>
</tr>
<tr>
<td>-PS</td>
<td>Optional</td>
<td>Output: psfile(Need -I)</td>
<td>stdout</td>
</tr>
<tr>
<td>-I</td>
<td>Optional</td>
<td>FileList: [[ASCII]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-OL</td>
<td>Optional</td>
<td>Output: [[ASCII]](ClusterList)</td>
<td>stdout</td>
</tr>
<tr>
<td>-OT</td>
<td>Optional</td>
<td>Output: [[ASCII]](TreeInfo)</td>
<td>NULL</td>
</tr>
<tr>
<td>-AL</td>
<td>Optional</td>
<td>Output: (OutAL, OutALRange, OutALSuffix)</td>
<td>(stdout, 0, avg)</td>
</tr>
<tr>
<td>-Last</td>
<td>Optional</td>
<td>Last: Num</td>
<td>1</td>
</tr>
<tr>
<td>-S</td>
<td>Optional</td>
<td>ArmScale: (Shulder, Arm)</td>
<td>(1, 1)</td>
</tr>
<tr>
<td>-P</td>
<td>Optional</td>
<td>Position: (X, Y)</td>
<td>(0, 0)</td>
</tr>
<tr>
<td>-Offset</td>
<td>Optional</td>
<td>Offset: Arm</td>
<td>1</td>
</tr>
<tr>
<td>-Log</td>
<td>Optional</td>
<td>Arm: Log Scale</td>
<td></td>
</tr>
<tr>
<td>-Scaling</td>
<td>Optional</td>
<td>with Scaling</td>
<td></td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>
<div>Any one of -i, -i2 or -ib is essential.</div>
<br>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</table>
<br>

== Execution example ==
===Input file===
<div>-i 's data</div>
<pre>
1 0 5 5 1.04435e+11
2 0 5 5 1.90062e+11
2 1 5 5 1.27924e+11
3 0 5 5 2.70151e+11
3 1 5 5 2.24399e+11
3 2 5 5 2.00805e+11
4 0 5 5 2.70277e+11
4 1 5 5 2.23333e+11
4 2 5 5 2.13958e+11
4 3 5 5 1.54653e+11
1 0 1 0 1.77375e+11
2 0 1 0 2.92444e+11
2 1 1 0 2.00805e+11
3 0 1 0 2.95344e+11
3 1 1 0 2.13958e+11
3 2 1 0 1.54653e+11
1 0 3 2 1.77375e+11
2 0 3 2 3.71482e+11
2 1 3 2 2.33577e+11
1 0 1 0 3.72121e+11

</pre>
<br>

<div>-i2 's data</div>
<pre>
CLUST MIN 1 0 1.04435e+11 0.83054
CLUST MIN 4 3 1.54653e+11 0.643245
CLUST MIN 2 0 1.77375e+11 0.751614
CLUST MIN 3 0 3.72121e+11 0.635649

</pre>
<br>

<div>-I 's data</div>
<pre>
Input-1VOM-N-2D.mrc
Input-1VOM-N-Rot-2D.mrc
Input-1VOM-N-Rot1-2D.mrc
Input-1VOM-N-Rot2-2D.mrc
Input-1VOM-N-Rot3-2D.mrc

</pre>
<br>

<div>[[Media:Outdata-clusterLogBin.zip|-ib data]]</div>
<div>filename</div>
<pre>
Outdata
Outdata.00000001.00000000.00000002
Outdata.00000001.00000000.00000004
Outdata.00000003.00000002.00000003
Outdata.00000005.00000005.00000005
</pre>
<br>

===Output file===
====-i data====
<div>-o 's data</div>
<pre>
1 0 5 5 1.04435e+11
2 0 5 5 1.90062e+11
2 1 5 5 1.27924e+11
3 0 5 5 2.70151e+11
3 1 5 5 2.24399e+11
3 2 5 5 2.00805e+11
4 0 5 5 2.70277e+11
4 1 5 5 2.23333e+11
4 2 5 5 2.13958e+11
4 3 5 5 1.54653e+11
1 0 1 0 1.77375e+11
2 0 1 0 2.92444e+11
2 1 1 0 2.00805e+11
3 0 1 0 2.95344e+11
3 1 1 0 2.13958e+11
3 2 1 0 1.54653e+11
1 0 3 2 1.77375e+11
2 0 3 2 3.71482e+11
2 1 3 2 2.33577e+11
1 0 1 0 3.72121e+11
</pre>
<br>

<div>-O 's data</div>
<pre>
1 0 5 5 1.04435e+11
3 2 1 0 1.54653e+11
1 0 3 2 1.77375e+11
1 0 1 0 3.72121e+11
</pre>
<br>

====-i2 data====
<div>-o 's data</div>
<pre>
1 0 5 5 1.04435e+11
3 2 1 0 1.54653e+11
1 0 3 2 1.77375e+11
1 0 1 0 3.72121e+11
</pre>
<br>

====-ib data====
<div>-o 's data</div>
<pre>
1 0 5 5 1.04435e+11
2 0 5 5 1.90062e+11
2 1 5 5 1.27924e+11
3 0 5 5 2.70151e+11
3 1 5 5 2.24399e+11
3 2 5 5 2.00805e+11
4 0 5 5 2.70277e+11
4 1 5 5 2.23333e+11
4 2 5 5 2.13958e+11
4 3 5 5 1.54653e+11
1 0 1 0 1.77375e+11
2 0 1 0 2.92444e+11
2 1 1 0 2.00805e+11
3 0 1 0 2.95344e+11
3 1 1 0 2.13958e+11
3 2 1 0 1.54653e+11
1 0 3 2 1.77375e+11
2 0 3 2 3.71482e+11
2 1 3 2 2.33577e+11
1 0 1 0 37.2121
</pre>
<br>

<div>-O 's data</div>
<pre>
1 0 5 5 1.04435e+11
3 2 1 0 1.54653e+11
1 0 3 2 1.77375e+11
1 0 1 0 37.2121
</pre>
<br>

====-i, -I data====
<div>-PS 's file</div>
<div>[[File:Outdata-PS-clusterShow.png]]</div>
<br>

<div>-OL 's data</div>
<pre>
Input-1VOM-N-2D.mrc 0 1.500000 267686019072.000000
Input-1VOM-N-Rot-2D.mrc 1 0.500000 267686019072.000000
Input-1VOM-N-Rot1-2D.mrc 2 -0.500000 194746007552.000000
Input-1VOM-N-Rot2-2D.mrc 3 -1.500000 217468010496.000000
Input-1VOM-N-Rot3-2D.mrc 4 -2.500000 217468010496.000000
</pre>
<br>

<div>-OT 's data</div>
<pre>
000003 0.000000 0.000000 1.000000 -1.500000 194746007552.000000 217468010496.000000
000004 217468010496.000000 -1.500000 0.500000 -0.500000 154652999680.000000 154652999680.000000
000002 194746007552.000000 1.000000 0.500000 -1.000000 72940003328.000000 177375002624.000000
000001 267686019072.000000 1.500000 0.500000 -0.500000 104434999296.000000 104434999296.000000
</pre>
<br>

<div>-AL 's data</div>
<div>Case: AL=(filename, 0, avg)</div>
<pre>
Input-1VOM-N-2D.mrc.avg 0 1.500000 267686019072.000000 0 0
Input-1VOM-N-Rot-2D.mrc.avg 1 0.500000 267686019072.000000 0 0
Input-1VOM-N-Rot1-2D.mrc.avg 2 -0.500000 194746007552.000000 0 0
Input-1VOM-N-Rot2-2D.mrc.avg 3 -1.500000 217468010496.000000 0 0
Input-1VOM-N-Rot3-2D.mrc.avg 4 -2.500000 217468010496.000000 0 0
</pre>
<br>

=== Option -S, -P, -Log===
====Case: S=(9, 9), P=(0, 100), -Log====
<div>-PS 's file(part)</div>
<div>[[File:Outdata-Log-clusterShow.png]]</div>
<br>

====Case: S=(9, 9), P=(100, 200), -Log====
<div>-PS 's file(part)</div>
<div>[[File:Outdata-P-clusterShow.png]]</div>
<br>

====Case: S=(6, 15), P=(0, 100), -Log====
<div>-PS 's file(part)</div>
<div>[[File:Outdata-S-clusterShow.png]]</div>
<br>

=== Option -Scaling===
====Case: -Scaling, S=(6, 30), P=(0, 100), -Log====
<div>-PS 's file(part)</div>
<div>[[File:Outdata-Scaling-clusterShow.png]]</div>
<br>

=== Option -Offset===
====Case: Offset=10, -Scaling, S=(6, 30), P=(0, 100), -Log====
<div>-PS 's file(part)</div>
<div>[[File:Outdata-Offset-clusterShow.png]]</div>
<br>