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		<id>http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?action=history&amp;feed=atom&amp;title=ctfDeterminationFromThonRing</id>
		<title>ctfDeterminationFromThonRing - Revision history</title>
		<link rel="self" type="application/atom+xml" href="http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?action=history&amp;feed=atom&amp;title=ctfDeterminationFromThonRing"/>
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		<updated>2026-05-14T15:26:24Z</updated>
		<subtitle>Revision history for this page on the wiki</subtitle>
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	<entry>
		<id>http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=ctfDeterminationFromThonRing&amp;diff=3457&amp;oldid=prev</id>
		<title>Kinoshita: Created page with &quot;'''ctfDeterminationFromThonRing''' is Eos's Command.   == List of option == === Main option === 		&lt;table border=&quot;1&quot;&gt; 			&lt;tr&gt;  				&lt;th&gt;Option&lt;/th&gt;  				&lt;th&gt;Essential/Op...&quot;</title>
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				<updated>2014-08-19T02:10:40Z</updated>
		
		<summary type="html">&lt;p&gt;Created page with &amp;quot;&amp;#039;&amp;#039;&amp;#039;ctfDeterminationFromThonRing&amp;#039;&amp;#039;&amp;#039; is &lt;a href=&quot;/Eos/index.php/Eos&quot; title=&quot;Eos&quot;&gt;Eos&lt;/a&gt;&amp;#039;s &lt;a href=&quot;/Eos/index.php/Command&quot; title=&quot;Command&quot;&gt;Command&lt;/a&gt;.   == List of option == === Main option === 		&amp;lt;table border=&amp;quot;1&amp;quot;&amp;gt; 			&amp;lt;tr&amp;gt;  				&amp;lt;th&amp;gt;Option&amp;lt;/th&amp;gt;  				&amp;lt;th&amp;gt;Essential/Op...&amp;quot;&lt;/p&gt;
&lt;p&gt;&lt;b&gt;New page&lt;/b&gt;&lt;/p&gt;&lt;div&gt;'''ctfDeterminationFromThonRing''' is [[Eos]]'s [[Command]].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== List of option ==&lt;br /&gt;
=== Main option ===&lt;br /&gt;
		&amp;lt;table border=&amp;quot;1&amp;quot;&amp;gt;&lt;br /&gt;
			&amp;lt;tr&amp;gt; &lt;br /&gt;
				&amp;lt;th&amp;gt;Option&amp;lt;/th&amp;gt; &lt;br /&gt;
				&amp;lt;th&amp;gt;Essential/Optional&amp;lt;/th&amp;gt; &lt;br /&gt;
				&amp;lt;th&amp;gt;Description&amp;lt;/th&amp;gt; &lt;br /&gt;
				&amp;lt;th&amp;gt;Default&amp;lt;/th&amp;gt; &lt;br /&gt;
			&amp;lt;/tr&amp;gt; &lt;br /&gt;
			&amp;lt;tr&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;-i&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;Optional&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;Input&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;stdin&amp;lt;/td&amp;gt; &lt;br /&gt;
			&amp;lt;/tr&amp;gt; &lt;br /&gt;
			&amp;lt;tr&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;-o&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;Optional&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;Output: [[ASCII]]&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;stdout&amp;lt;/td&amp;gt; &lt;br /&gt;
			&amp;lt;/tr&amp;gt; 			&amp;lt;tr&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;-kV&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;Optional&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;[[Acceleration voltage]]: [kV]&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;200&amp;lt;/td&amp;gt; &lt;br /&gt;
			&amp;lt;/tr&amp;gt; &lt;br /&gt;
			&amp;lt;tr&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;-Cs&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;Optional&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;[[Spherical aberration coefficient]]: [mm]&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;2.1&amp;lt;/td&amp;gt; &lt;br /&gt;
			&amp;lt;/tr&amp;gt; &lt;br /&gt;
			&amp;lt;tr&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;-Def&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;Optional&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;Defocus: [A](minDef, maxDef, delDef)&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;(0.0, 200000.0, 1000.0)&amp;lt;/td&amp;gt; &lt;br /&gt;
			&amp;lt;/tr&amp;gt; &lt;br /&gt;
			&amp;lt;tr&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;-Amp&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;Optional&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;AmpToPhase(minAmp, maxAmp, delAmp)&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;(0.0, 0.4, 0.005)&amp;lt;/td&amp;gt; &lt;br /&gt;
			&amp;lt;/tr&amp;gt; &lt;br /&gt;
			&amp;lt;tr&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;-R&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;Optional&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;[[Variable]]: ThonRing[/A]&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;NULL ...&amp;lt;/td&amp;gt; &lt;br /&gt;
			&amp;lt;/tr&amp;gt; &lt;br /&gt;
			&amp;lt;tr&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;-c&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;Optional&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;ConfigurationFile&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;NULL&amp;lt;/td&amp;gt; &lt;br /&gt;
			&amp;lt;/tr&amp;gt; &lt;br /&gt;
			&amp;lt;tr&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;-m&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;Optional&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;Mode&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;0&amp;lt;/td&amp;gt; &lt;br /&gt;
			&amp;lt;/tr&amp;gt; &lt;br /&gt;
			&amp;lt;tr&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;-h&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;Optional&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;Help&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;　&amp;lt;/td&amp;gt; &lt;br /&gt;
			&amp;lt;/tr&amp;gt; &lt;br /&gt;
		&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== -m details ===&lt;br /&gt;
		&amp;lt;table border=&amp;quot;1&amp;quot;&amp;gt;&lt;br /&gt;
			&amp;lt;tr&amp;gt; &lt;br /&gt;
				&amp;lt;th&amp;gt;Value&amp;lt;/th&amp;gt; &lt;br /&gt;
				&amp;lt;th&amp;gt;Description&amp;lt;/th&amp;gt; &lt;br /&gt;
			&amp;lt;/tr&amp;gt; &lt;br /&gt;
			&amp;lt;tr&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;0&amp;lt;/td&amp;gt; &lt;br /&gt;
				&amp;lt;td&amp;gt;&amp;lt;/td&amp;gt; &lt;br /&gt;
			&amp;lt;/tr&amp;gt; &lt;br /&gt;
		&amp;lt;/table&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Execution example ==&lt;br /&gt;
=== Case: Options only essential ===&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
Length: 0.100000 0.500000&lt;br /&gt;
minE : 1.000000  (0.000000, 0.000000)&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=== Option -R===&lt;br /&gt;
====Case: R=100==== &lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
Length: 0.100000 0.500000&lt;br /&gt;
0.239357: (0.000000, 0.000000)&lt;br /&gt;
0.234502: (0.000000, 0.005000)&lt;br /&gt;
0.229648: (0.000000, 0.010000)&lt;br /&gt;
0.224793: (0.000000, 0.015000)&lt;br /&gt;
0.219938: (0.000000, 0.020000)&lt;br /&gt;
&lt;br /&gt;
...&lt;br /&gt;
&lt;br /&gt;
0.001479: (0.000000, 0.245000)&lt;br /&gt;
0.000772: (10000.000000, 0.275000)&lt;br /&gt;
0.000741: (30000.000000, 0.330000)&lt;br /&gt;
0.000198: (40000.000000, 0.360000)&lt;br /&gt;
0.000108: (95000.000000, 0.220000)&lt;br /&gt;
minE : 0.000108  (95000.000000, 0.220000)&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=== Option -o===&lt;br /&gt;
====Case: Set Output file, R=100==== &lt;br /&gt;
&amp;lt;div&amp;gt;Output&amp;lt;/div&amp;gt;&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
Length: 0.100000 0.500000&lt;br /&gt;
0.239357: (0.000000, 0.000000)&lt;br /&gt;
0.234502: (0.000000, 0.005000)&lt;br /&gt;
0.229648: (0.000000, 0.010000)&lt;br /&gt;
0.224793: (0.000000, 0.015000)&lt;br /&gt;
0.219938: (0.000000, 0.020000)&lt;br /&gt;
&lt;br /&gt;
...&lt;br /&gt;
&lt;br /&gt;
0.001479: (0.000000, 0.245000)&lt;br /&gt;
0.000772: (10000.000000, 0.275000)&lt;br /&gt;
0.000741: (30000.000000, 0.330000)&lt;br /&gt;
0.000198: (40000.000000, 0.360000)&lt;br /&gt;
0.000108: (95000.000000, 0.220000)&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;div&amp;gt;Output file's data&amp;lt;/div&amp;gt;&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
minE : 0.000108  (95000.000000, 0.220000)&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=== Option -kV===&lt;br /&gt;
====Case: kV=100, R=100==== &lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
Length: 0.100000 0.500000&lt;br /&gt;
0.223322: (0.000000, 0.000000)&lt;br /&gt;
0.046639: (3000.000000, 0.000000)&lt;br /&gt;
0.041645: (3000.000000, 0.005000)&lt;br /&gt;
0.036650: (3000.000000, 0.010000)&lt;br /&gt;
0.031655: (3000.000000, 0.015000)&lt;br /&gt;
0.026661: (3000.000000, 0.020000)&lt;br /&gt;
0.021666: (3000.000000, 0.025000)&lt;br /&gt;
0.016672: (3000.000000, 0.030000)&lt;br /&gt;
0.011677: (3000.000000, 0.035000)&lt;br /&gt;
0.006683: (3000.000000, 0.040000)&lt;br /&gt;
0.001688: (3000.000000, 0.045000)&lt;br /&gt;
0.000274: (6000.000000, 0.330000)&lt;br /&gt;
minE : 0.000274  (6000.000000, 0.330000)&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=== Option -Cs===&lt;br /&gt;
====Case: Cs=2.0, R=100==== &lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
Length: 0.100000 0.500000&lt;br /&gt;
0.679534: (0.000000, 0.000000)&lt;br /&gt;
0.675866: (0.000000, 0.005000)&lt;br /&gt;
0.672198: (0.000000, 0.010000)&lt;br /&gt;
0.668529: (0.000000, 0.015000)&lt;br /&gt;
0.664861: (0.000000, 0.020000)&lt;br /&gt;
&lt;br /&gt;
...&lt;br /&gt;
&lt;br /&gt;
0.001095: (6000.000000, 0.390000)&lt;br /&gt;
0.000679: (28000.000000, 0.310000)&lt;br /&gt;
0.000453: (93000.000000, 0.200000)&lt;br /&gt;
0.000391: (104000.000000, 0.000000)&lt;br /&gt;
0.000037: (129000.000000, 0.350000)&lt;br /&gt;
minE : 0.000037  (129000.000000, 0.350000)&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=== Option -Def===&lt;br /&gt;
====Case: Defe=(10000, 20000, 100), R=100==== &lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
Length: 0.010000 0.500000&lt;br /&gt;
0.264439: (10000.000000, 0.000000)&lt;br /&gt;
0.259617: (10000.000000, 0.005000)&lt;br /&gt;
0.254795: (10000.000000, 0.010000)&lt;br /&gt;
0.249973: (10000.000000, 0.015000)&lt;br /&gt;
0.245151: (10000.000000, 0.020000)&lt;br /&gt;
&lt;br /&gt;
...&lt;br /&gt;
&lt;br /&gt;
0.008872: (10000.000000, 0.265000)&lt;br /&gt;
0.004050: (10000.000000, 0.270000)&lt;br /&gt;
0.000772: (10000.000000, 0.275000)&lt;br /&gt;
0.000549: (14200.000000, 0.125000)&lt;br /&gt;
0.000140: (19600.000000, 0.080000)&lt;br /&gt;
minE : 0.000140  (19600.000000, 0.080000)&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=== Option -Amp===&lt;br /&gt;
====Case: Amp=(0.1, 0.8, 0.01), R=100==== &lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
Length: 0.100000 1.000000&lt;br /&gt;
0.142264: (0.000000, 0.100000)&lt;br /&gt;
0.132555: (0.000000, 0.110000)&lt;br /&gt;
0.122845: (0.000000, 0.120000)&lt;br /&gt;
0.113136: (0.000000, 0.130000)&lt;br /&gt;
0.103427: (0.000000, 0.140000)&lt;br /&gt;
0.093717: (0.000000, 0.150000)&lt;br /&gt;
0.084008: (0.000000, 0.160000)&lt;br /&gt;
0.074299: (0.000000, 0.170000)&lt;br /&gt;
0.064589: (0.000000, 0.180000)&lt;br /&gt;
0.054880: (0.000000, 0.190000)&lt;br /&gt;
0.045171: (0.000000, 0.200000)&lt;br /&gt;
0.035461: (0.000000, 0.210000)&lt;br /&gt;
0.025752: (0.000000, 0.220000)&lt;br /&gt;
0.016043: (0.000000, 0.230000)&lt;br /&gt;
0.006333: (0.000000, 0.240000)&lt;br /&gt;
0.003376: (0.000000, 0.250000)&lt;br /&gt;
0.003014: (2000.000000, 0.290000)&lt;br /&gt;
0.001801: (4000.000000, 0.330000)&lt;br /&gt;
0.000741: (30000.000000, 0.330000)&lt;br /&gt;
0.000136: (35000.000000, 0.690000)&lt;br /&gt;
0.000108: (95000.000000, 0.220000)&lt;br /&gt;
minE : 0.000108  (95000.000000, 0.220000)&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;/div&gt;</summary>
		<author><name>Kinoshita</name></author>	</entry>

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