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ctfMultiFunction - Revision history
2026-05-04T15:34:38Z
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Kinoshita: Created page with "'''ctfMultiFunction''' is Eos's Command. == List of option == === Main option === <table border="1"> <tr> <th>Option</th> <th>Essential/Optional</th>..."
2014-08-20T00:31:16Z
<p>Created page with "'''ctfMultiFunction''' is <a href="/Eos/index.php/Eos" title="Eos">Eos</a>'s <a href="/Eos/index.php/Command" title="Command">Command</a>. == List of option == === Main option === <table border="1"> <tr> <th>Option</th> <th>Essential/Optional</th>..."</p>
<p><b>New page</b></p><div>'''ctfMultiFunction''' is [[Eos]]'s [[Command]].<br />
<br />
<br />
== List of option ==<br />
=== Main option ===<br />
<table border="1"><br />
<tr> <br />
<th>Option</th> <br />
<th>Essential/Optional</th> <br />
<th>Description</th> <br />
<th>Default</th> <br />
</tr> <br />
<tr> <br />
<td>-I</td> <br />
<td>Optional</td> <br />
<td>Input: [[ASCII]]</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-o</td> <br />
<td>Essential</td> <br />
<td>Output: [[ASCII]]</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-Rmax</td> <br />
<td>Optional</td> <br />
<td>max Spatial frequency[/A]</td> <br />
<td>0.1</td> <br />
</tr> <br />
<tr> <br />
<td>-dR</td> <br />
<td>Optional</td> <br />
<td>delta Spatial frequency[/A]</td> <br />
<td>0.0001</td> <br />
</tr> <br />
<tr> <br />
<td>-Ain</td> <br />
<td>Optional</td> <br />
<td>[[Illumination Aperture]][mrad]</td> <br />
<td>0.02</td> <br />
</tr> <br />
<tr> <br />
<td>-ctfMode</td> <br />
<td>Optional</td> <br />
<td>CTFMode</td> <br />
<td>33</td> <br />
</tr> <br />
<tr> <br />
<td>-c</td> <br />
<td>Optional</td> <br />
<td>ConfigurationFile</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-m</td> <br />
<td>Optional</td> <br />
<td>Mode</td> <br />
<td>0</td> <br />
</tr> <br />
<tr> <br />
<td>-h</td> <br />
<td>Optional</td> <br />
<td>Help</td> <br />
<td> </td> <br />
</tr> <br />
</table> <br />
<br><br />
<br />
=== -m details ===<br />
<table border="1"><br />
<tr> <br />
<th>Value</th> <br />
<th>Description</th> <br />
</tr> <br />
<tr> <br />
<td>0</td> <br />
<td></td> <br />
</tr> <br />
</table> <br />
<br><br />
<br />
===CTFMode details===<br />
<table border="1"> <br />
<div align="left"> <br />
<tr> <br />
<th>Value</th> <br />
<th>Description</th> <br />
</tr> <br />
<tr> <br />
<td>0</td> <br />
<td>Phase CTF</td> <br />
</tr> <br />
<tr> <br />
<td>1</td> <br />
<td>PhaseCTF + ratio*AmpCTF </td> <br />
</tr> <br />
<tr> <br />
<td>32</td> <br />
<td>Envelope From A illumination*()</td> <br />
</tr> <br />
</div> <br />
</table><br />
<br><br />
<br />
===-I format===<br />
<pre><br />
defocus Cs kV AmplitudeContrast<br />
<br />
</pre><br />
<div>It is created by [[llExtractWithLayerSeparationFilamentInfo]](-oI)</div><br />
<br><br />
<br />
== Execution example ==<br />
=== Option -I===<br />
<div>-I 's data</div><br />
<pre><br />
27000.000000 2.100000 200.000000 0.100000<br />
20000.000000 2.000000 100.000000 0.200000<br />
<br />
</pre><br />
<br><br />
<br />
<div>-o 's data</div><br />
<pre><br />
0.000000e+00 1.500000e-01<br />
1.000000e-04 1.500223e-01<br />
2.000000e-04 1.500890e-01<br />
3.000000e-04 1.502003e-01<br />
4.000000e-04 1.503560e-01<br />
<br />
...<br />
<br />
2.499996e-02 1.003718e+00<br />
2.509996e-02 1.003929e+00<br />
2.519996e-02 1.004015e+00<br />
2.529996e-02 1.003974e+00<br />
2.539996e-02 1.003805e+00<br />
<br />
...<br />
<br />
3.540003e-02 2.013617e-01<br />
3.550003e-02 1.859707e-01<br />
3.560003e-02 1.704947e-01<br />
3.570003e-02 1.714163e-01<br />
3.580003e-02 1.726478e-01<br />
<br />
...<br />
<br />
4.500019e-02 9.735332e-01<br />
4.510019e-02 9.742426e-01<br />
4.520019e-02 9.745606e-01<br />
4.530019e-02 9.744846e-01<br />
4.540019e-02 9.740120e-01<br />
<br />
...<br />
<br />
5.100029e-02 3.283049e-01<br />
5.110029e-02 3.076984e-01<br />
5.120029e-02 2.869061e-01<br />
5.130029e-02 2.877476e-01<br />
5.140030e-02 2.907183e-01<br />
<br />
...<br />
<br />
5.860042e-02 9.264785e-01<br />
5.870042e-02 9.274181e-01<br />
5.880042e-02 9.277267e-01<br />
5.890042e-02 9.274014e-01<br />
5.900043e-02 9.264401e-01<br />
<br />
...<br />
<br />
6.290049e-02 4.205727e-01<br />
6.300049e-02 3.977081e-01<br />
6.310049e-02 3.787018e-01<br />
6.320050e-02 3.847213e-01<br />
6.330050e-02 3.904706e-01<br />
<br />
...<br />
<br />
6.960060e-02 8.637956e-01<br />
6.970061e-02 8.649303e-01<br />
6.980061e-02 8.652359e-01<br />
6.990061e-02 8.647101e-01<br />
7.000061e-02 8.633510e-01<br />
<br />
...<br />
<br />
7.290066e-02 4.840132e-01<br />
7.300066e-02 4.610246e-01<br />
7.310066e-02 4.464689e-01<br />
7.320067e-02 4.565637e-01<br />
7.330067e-02 4.662275e-01<br />
<br />
...<br />
<br />
9.950111e-02 8.115075e-01<br />
9.960111e-02 8.088512e-01<br />
9.970111e-02 8.046168e-01<br />
9.980112e-02 7.988045e-01<br />
9.990112e-02 7.914170e-01<br />
</pre><br />
<br><br />
<br />
<div>In the following, Using at-I 's data</div><br />
=== Option -Rmax===<br />
====Case: Rmax=0.0254====<br />
<div>-o 's data</div><br />
<pre><br />
0.000000e+00 1.500000e-01<br />
1.000000e-04 1.500223e-01<br />
2.000000e-04 1.500890e-01<br />
3.000000e-04 1.502003e-01<br />
4.000000e-04 1.503560e-01<br />
<br />
...<br />
<br />
2.499996e-02 1.003718e+00<br />
2.509996e-02 1.003929e+00<br />
2.519996e-02 1.004015e+00<br />
2.529996e-02 1.003974e+00<br />
2.539996e-02 1.003805e+00<br />
</pre><br />
<br><br />
<br />
=== Option -dR===<br />
====Case: dR=0.0002====<br />
<div>-o 's data</div><br />
<pre><br />
0.000000e+00 1.500000e-01<br />
2.000000e-04 1.500890e-01<br />
4.000000e-04 1.503560e-01<br />
6.000000e-04 1.508010e-01<br />
8.000000e-04 1.514240e-01<br />
<br />
...<br />
<br />
9.900053e-02 8.012962e-01<br />
9.920053e-02 8.100373e-01<br />
9.940054e-02 8.125905e-01<br />
9.960054e-02 8.088710e-01<br />
9.980054e-02 7.988421e-01<br />
</pre><br />
<br></div>
Kinoshita