Kinoshita at 00:35, 25 August 2014

2014-08-25T00:35:19Z

Kinoshita: Created page with "'''llExtract''' is Eos's Command that transforms from FFT data to llData. llDataPrint can display output file as graph. == List of option == === Main opti..."

2014-08-25T00:12:35Z

Created page with "'''llExtract''' is Eos's Command that transforms from FFT data to llData. llDataPrint can display output file as graph. == List of option == === Main opti..."

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'''llExtract''' is [[Eos]]'s [[Command]] that transforms from [[FFT]] data to [[llData]]. [[llDataPrint]] can display output file as graph.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-t</td>
<td>Optional</td>
<td>Tiltle: [[ASCII]][80]</td>
<td>NULL</td>
</tr>
<tr>
<td>-s</td>
<td>Optional</td>
<td>Step[A]: (xStep, yStep)</td>
<td>(1.0, 1.0)</td>
</tr>
<tr>
<td>-M</td>
<td>Optional</td>
<td>Max[GridUnit]: (MaxX, MaxY)</td>
<td>(1.0, 1.0)</td>
</tr>
<tr>
<td>-i</td>
<td>Optional</td>
<td>Input: [[mrcImage]](FFT)</td>
<td>NULL</td>
</tr>
<tr>
<td>-1</td>
<td>Optional</td>
<td>Output: NearSide: [llData]</td>
<td>NULL</td>
</tr>
<tr>
<td>-2</td>
<td>Optional</td>
<td>Output: FarSide: [llData]</td>
<td>NULL</td>
</tr>
<tr>
<td>-R</td>
<td>Optional</td>
<td>RotationAngle: [Degree]</td>
<td>0.0</td>
</tr>
<tr>
<td>-O</td>
<td>Optional</td>
<td>Omega: [Degree]</td>
<td>0.0</td>
</tr>
<tr>
<td>-S</td>
<td>Optional</td>
<td>Shear: [Degree]</td>
<td>0.0</td>
</tr>
<tr>
<td>-I</td>
<td>Optional</td>
<td>ievery</td>
<td>0</td>
</tr>
<tr>
<td>-axl</td>
<td>Optional</td>
<td>axl</td>
<td>0.0</td>
</tr>
<tr>
<td>-ayl</td>
<td>Optional</td>
<td>ayl</td>
<td>0.0</td>
</tr>
<tr>
<td>-x</td>
<td>Optional</td>
<td>xShift: [GridUnit]</td>
<td>0.0</td>
</tr>
<tr>
<td>-l</td>
<td>Optional</td>
<td>llMax</td>
<td>0</td>
</tr>
<tr>
<td>-d</td>
<td>Optional</td>
<td>delRInv: [A]</td>
<td>0.0</td>
</tr>
<tr>
<td>-f</td>
<td>Optional</td>
<td>flagOutputInfo</td>
<td></td>
</tr>
<tr>
<td>-L</td>
<td>Optional</td>
<td>[[Variable]]: LayerLineInfo: (n, l, Y, leftMin, leftMax, rightMin, rightMax, weight) ...</td>
<td>(0, 0, 0.0, 0.0, 0.0, 0.0, 0.0, 1.0)</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile: [[ASCII]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>
<div>-s: must set (Lengthx, Lengthy).</div>
<div>-d: must set Nx * Lengthx </div>
<br>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</table>
<br>

===ConfigurationFile format===
<pre>
Title
xStep yStep
MaxX MaxY
InputFileName
OutputFileName(NearSide)
OutputFileName(FarSide)
RotationAngle
Omega
Share
ievery
axl
ayl
xShift
llMax
delRInv
flagOutputInfo
n0 l0 Y0 leftMin0 leftMax0 rightMin0 rightMax0 weight0
n1 l1 Y1 leftMin1 leftMax1 rightMin1 rightMax1 weight1
.
.

</pre>
<div>[[llExtractCtrlFileCreate]] can create it.</div>
<div>The data that is set by option is not read, but these lines must not be omitted.</div>
<br>

== Execution example ==
===[[:Media:1ATOMFil.fft|Input file]] image===
<div>by [[mrcFFTExpression]](m=1)</div>
<table>
<tr>
<td><p align="Center">[[File:1ATOMFil-FFT.png]]<br>
Whole area<br></p>
</td>
<td><p align="Center">[[File:1ATOMFil-FFT1.png]]<br>
Around center<br></p>
</td>
<td><p align="left">Size<br>
Mode<br>
Length<br>
Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">( 512, 1146, 1)<br>
mrcComplexFloatFT <br>
( 2.000, 2.000, 0.000)<br>
4.08519e-10 (257, 572, 0)<br>
0.109661 (0, 0, 0)<br>
0.00909953<br>
0.00776913<br>
1.01425e-05<br></p>
</td>
</tr>
</table>
<br>

=== Option -c===
====[[Media:Input-LLConf.txt|ConfigurationFile1]]====
<div>Setting the following data.</div>
<pre>
llData
2 2
255 572
In
Nea
Far
0.0
0.0
0.0
0
0.0
0.0
256
12
1024
0
0 0 0 0 255 0 255 0.5
2 2 72 0 255 0 255 1.0
4 4 144 0 255 0 255 1.0
-3 11 -66 0 255 0 255 1.0
-1 13 6 0 255 0 255 1.0
1 15 78 0 255 0 255 1.0
3 17 150 0 255 0 255 1.0
-4 24 -60 0 255 0 255 1.0
-2 26 12 0 255 0 255 1.0
0 28 84 0 255 0 255 1.0
2 30 156 0 255 0 255 1.0
4 32 228 0 255 0 255 1.0

</pre>
<br>

<div>-1 's data</div>
<pre>
LAYERLINE 0 NEAR................................................................................ 5.00000e-01 0 0
0.00000e+00 1.09661e-01 1.00179e-05
9.76562e-04 1.07064e-01 1.66569e-07
1.95312e-03 9.94539e-02 1.79314e-06
2.92969e-03 8.73620e-02 1.63306e-06
3.90625e-03 7.16275e-02 9.95900e-07

...

2.48047e-01 2.45430e-02 1.00179e-05
2.49023e-01 2.57134e-02 1.00179e-05
0.00000e+00 0.00000e+00 0.00000e+00
LAYERLINE 1 NEAR................................................................................ 1.00000e+00 2 2
0.00000e+00 2.36747e-04 3.27016e+02
9.76562e-04 2.19473e-05 3.21478e+02
1.95312e-03 9.17815e-05 1.00204e+02
2.92969e-03 2.42726e-04 4.08337e+01
3.90625e-03 7.48780e-04 1.25217e+01

...

2.48047e-01 5.52613e-03 7.64794e+01
2.49023e-01 6.03607e-03 8.58422e+01
0.00000e+00 0.00000e+00 0.00000e+00
LAYERLINE 2 NEAR................................................................................ 1.00000e+00 4 4
0.00000e+00 1.56065e-03 2.94032e+02
9.76562e-04 1.02912e-03 2.90051e+02
1.95312e-03 7.23528e-04 2.77422e+02
2.92969e-03 6.94803e-04 2.59534e+02
3.90625e-03 8.97704e-04 2.50892e+02

...

LAYERLINE 3 NEAR................................................................................ 1.00000e+00 -3 11

...

LAYERLINE 11 NEAR................................................................................ 1.00000e+00 4 32

...

2.45117e-01 2.10039e-02 3.42847e+02
2.46094e-01 2.36644e-02 3.43764e+02
2.47070e-01 2.59560e-02 3.44583e+02
2.48047e-01 2.78412e-02 3.45314e+02
2.49023e-01 2.92789e-02 3.45958e+02
0.00000e+00 0.00000e+00 0.00000e+00
</pre>
<br>

<div>-2 's data</div>
<pre>
LAYERLINE 0 FAR ................................................................................ 5.00000e-01 0 0
0.00000e+00 1.09661e-01 1.00179e-05
9.76562e-04 1.07064e-01 1.00179e-05
1.95312e-03 9.94539e-02 1.00179e-05
2.92969e-03 8.73620e-02 1.00179e-05
3.90625e-03 7.16275e-02 1.00179e-05

...

2.48047e-01 2.45430e-02 5.44967e-07
2.49023e-01 2.57134e-02 8.66931e-07
0.00000e+00 0.00000e+00 0.00000e+00
LAYERLINE 1 FAR ................................................................................ 1.00000e+00 2 2
0.00000e+00 2.36747e-04 3.27016e+02
9.76562e-04 5.38817e-04 3.33733e+02
1.95312e-03 9.34154e-04 3.39000e+02
2.92969e-03 1.47219e-03 3.43420e+02
3.90625e-03 2.23950e-03 3.46949e+02

...

2.48047e-01 6.32650e-03 7.40293e+01
2.49023e-01 6.41878e-03 8.40146e+01
0.00000e+00 0.00000e+00 0.00000e+00
LAYERLINE 2 FAR ................................................................................ 1.00000e+00 4 4
0.00000e+00 1.56065e-03 2.94032e+02
9.76562e-04 2.26294e-03 2.94056e+02
1.95312e-03 3.08391e-03 2.92763e+02
2.92969e-03 3.96259e-03 2.91127e+02
3.90625e-03 4.82953e-03 2.89482e+02

...

LAYERLINE 3 FAR ................................................................................ 1.00000e+00 -3 11

...

LAYERLINE 11 FAR ................................................................................ 1.00000e+00 4 32

...

2.45117e-01 2.58909e-02 3.47760e+02
2.46094e-01 2.80857e-02 3.47725e+02
2.47070e-01 2.95940e-02 3.47578e+02
2.48047e-01 3.04287e-02 3.47325e+02
2.49023e-01 3.06231e-02 3.46968e+02
0.00000e+00 0.00000e+00 0.00000e+00
</pre>
<br>

← Older revision		Revision as of 00:35, 25 August 2014
Line 1:		Line 1:
−	'''llExtract''' is [[Eos]]'s [[Command]] that ~~transforms from~~ [[~~FFT~~]] ~~data to~~ [[~~llData~~]]. [[llDataPrint]] can display output file as graph.	+	'''llExtract''' is [[Eos]]'s [[Command]] that extracts [[llData]] from [[FFT]] data. [[llDataPrint]] can display output file as graph.

	== List of option ==		== List of option ==

llExtract - Revision history

Kinoshita at 00:35, 25 August 2014

Kinoshita: Created page with "'''llExtract''' is Eos's Command that transforms from FFT data to llData. llDataPrint can display output file as graph. == List of option == === Main opti..."