llExtractWithLayerSeparationCtrlFileCreate - Revision history

Kinoshita: Created page with "'''llExtractWithLayerSeparationCtrlFileCreate''' is Eos's Command. == List of option == === Main option ===
2014-08-25T01:51:27Z

Created page with "'''llExtractWithLayerSeparationCtrlFileCreate''' is Eos's Command. == List of option == === Main option === <table border="1"> <tr> <th>Option</th> <t..."

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'''llExtractWithLayerSeparationCtrlFileCreate''' is [[Eos]]'s [[Command]].

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Optional</td>
<td>Input: [[llData]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Optional</td>
<td>Output: [[ASCII]]</td>
<td>stdout</td>
</tr>
<tr>
<td>-t</td>
<td>Essential</td>
<td>Turn</td>
<td>-13</td>
</tr>
<tr>
<td>-u</td>
<td>Essential</td>
<td>Unit</td>
<td>28</td>
</tr>
<tr>
<td>-N</td>
<td>Optional</td>
<td>Helix</td>
<td>1</td>
</tr>
<tr>
<td>-dY</td>
<td>Optional</td>
<td>Position of the 1st layer line: [Pixel]</td>
<td>3</td>
</tr>
<tr>
<td>-truePitch</td>
<td>Essential</td>
<td>truePitch: [A]</td>
<td>770</td>
</tr>
<tr>
<td>-rMax</td>
<td>Essential</td>
<td>rMax: [A]</td>
<td>50</td>
</tr>
<tr>
<td>-RMax</td>
<td>Optional</td>
<td>RMax: [A]</td>
<td>0.1</td>
</tr>
<tr>
<td>-RZMax</td>
<td>Optional</td>
<td>RZMax: [A]</td>
<td>0.1</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</table>

== Execution example ==
===[[:Media:1ATOMFil.fft|Input file]] image===
<div>by [[mrcFFTExpression]](m=1)</div>
<table>
<tr>
<td><p align="Center">[[File:1ATOMFil-FFT.png]]<br>
Whole area<br></p>
</td>
<td><p align="Center">[[File:1ATOMFil-FFT1.png]]<br>
Around center<br></p>
</td>
<td><p align="left">Size<br>
Mode<br>
Length<br>
Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">( 512, 1146, 1)<br>
mrcComplexFloatFT <br>
( 2.000, 2.000, 0.000)<br>
4.08519e-10 (257, 572, 0)<br>
0.109661 (0, 0, 0)<br>
0.00909953<br>
0.00776913<br>
1.01425e-05<br></p>
</td>
</tr>
</table>
<br>

=== Case: Options only essential ===
====Case: t=-13, u=28, truePitch=364, rMax=50====
<pre>
LengthY 2292.000000 [A] = LengthY 1146 [Pixel] x PixelSize 2.000000 [A/Pixel]
Final CalculatedY 6.296703
CalculatedY 6
Error[Pixel] -54
36 50.000000 0.100000 0.500000
0 0 3 0 28 -28
1 6 2 -13 15
2 12 3 2 -26 30
3 18 2 -11 17
4 24 3 4 -24 32
5 30 2 -9 19
6 36 2 6 -22
7 42 2 -7 21
8 48 2 8 -20
9 54 3 -5 23 -33
10 60 2 10 -18
11 66 3 -3 25 -31
12 72 2 12 -16
13 78 3 -1 27 -29
14 84 2 14 -14
15 90 3 1 -27 29
16 96 2 -12 16
17 102 3 3 -25 31
18 108 2 -10 18
19 114 3 5 -23 33
20 120 2 -8 20
21 126 2 7 -21
22 132 2 -6 22
23 138 2 9 -19
24 144 3 -4 24 -32
25 150 2 11 -17
26 156 3 -2 26 -30
27 162 2 13 -15
28 168 3 0 28 -28
29 174 2 -13 15
30 180 3 2 -26 30
31 186 2 -11 17
32 192 3 4 -24 32
33 198 2 -9 19
34 204 2 6 -22
35 210 2 -7 21
</pre>

Option