http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?action=history&feed=atom&title=lmrcImageCorrelation%28API%29 2026-08-30T09:54:30Z Revision history for this page on the wiki MediaWiki 1.23.6 http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=lmrcImageCorrelation(API)&diff=3756&oldid=prev 2014-09-01T01:53:17Z

<p>Created page with &quot;DataManip/mrcImage/src/&#039;&#039;&#039;lmrcImageCorrelation&#039;&#039;&#039; is API for correlation between <a href="/Eos/index.php/mrcImage" title="mrcImage">mrcImages</a>. It is used by <a href="/Eos/index.php/mrcImageCorrelation" title="mrcImageCorrelation">mrcImageCorrelation</a>, <a href="/Eos/index.php/mrcImageAutoRotationCorrelation" title="mrcImageAutoRotationCorrelation">mrcImageAutoRotationCorrelation</a>. In...&quot;</p> <p><b>New page</b></p><div>DataManip/mrcImage/src/'''lmrcImageCorrelation''' is API for correlation between [[mrcImage]]s. It is used by [[mrcImageCorrelation]], [[mrcImageAutoRotationCorrelation]]. In addition, it is also used for define of relation between images. (e.g. [[Cluster Analysis]])<br /> <br /> == constant ==<br /> <br /> == struct ==<br /> ===Correlation Method===<br /> It is used as value of Method. (lmrcImageAutoRotationCorrelationInfo 's member)<br /> typedef enum lmrcImageAutoRotationCorrelationMethod {<br /> lmrcImageAutoRotationCorrelationMethodRotationAndCorrelation = 0,<br /> lmrcImageAutoRotationCorrelationMethodRotationAndCorrelationSSDA = 1,<br /> lmrcImageAutoRotationCorrelationMethodRotationalFunction = 2<br /> } lmrcImageAutoRotationCorrelationMethod;<br /> <br /> ===Correlation Information===<br /> lmrcImageAutoRotationCorrelationSetting data for .<br /> typedef struct lmrcImageAutoRotationCorrelationInfo {<br /> int iter; /* iteration */<br /> int nRot; /* Rotation */ <br /> lmrcImageAutoRotationCorrelationMethod Method;<br /> float max;<br /> float maxTheta;<br /> mrcImageParaTypeRealCoord maxP;<br /> mrcImageInformation corInfo;<br /> lmrcImageSSDAInfo SSDAInfo;<br /> float EuclidDistance; <br /> float LinearCorrelation;<br /> <br /> /* Restriction Rotation Area */<br /> int flagRestrictionArea;<br /> float thetaMin;<br /> float thetaMax;<br /> <br /> int flagShiftRange;<br /> float shiftMinX;<br /> float shiftMinY;<br /> float shiftMaxX;<br /> float shiftMaxY;<br /> <br /> int flagXshiftOnly;<br /> int flagNoShift;<br /> } lmrcImageAutoRotationCorrelationInfo;<br /> <br /> lmrcImageCorrelationRefinementSetting data for .<br /> typedef struct lmrcImageCorrelationRefinementInfo {<br /> mrcImageParaTypeRealCoord shift; <br /> mrcImageParaTypeRealCoord step; <br /> mrcImageParaTypeRealCoord range; <br /> mrcImageInformation corInfo;<br /> int mode;<br /> } lmrcImageCorrelationRefinementInfo;<br /> <br /> ===Rotation Mode===<br /> typedef enum lmrcImageAutoRotationCorrelationForManyReferencesRotationOrder {<br /> lmrcImageAutoRotationCorrelationForManyReferencesStackOrderRot1Rot2Rot3=0,<br /> lmrcImageAutoRotationCorrelationForManyReferencesStackOrderRot3Rot2Rot1=1<br /> } lmrcImageAutoRotationCorrelationForManyReferencesStackOrder;<br /> <br /> typedef enum lmrcImageAutoRotationCorrelationForManyReferencesRefinementMode {<br /> lmrcImageAutoRotationCorrelationForManyReferencesRefinementModeLinear =0,<br /> lmrcImageAutoRotationCorrelationForManyReferencesRefinementModeSetMode =1<br /> } lmrcImageAutoRotationCorrelationForManyReferencesRefinementMode;<br /> <br /> typedef struct lmrcImageAutoRotationCorrelationForManyReferencesInfo {<br /> int nRot1; /* Image Number in Ref*/<br /> int nRot1Step; /* Coarse Step in Fitting */<br /> double nRot1AreaMin; /* Min: Rotation Area in Fitting */<br /> double nRot1AreaMax; /* Max: Rotation Area in Fitting */<br /> double nRot1AreaStep; /* Step: Rotation Area in Fitting */<br /> double nRot1Delta; /* Delta: Rotation Interval of Ref */<br /> double nRot1Start; /* Start: Rotation Interval of Ref */<br /> <br /> int nRot2;<br /> int nRot2Step;<br /> double nRot2AreaMin;<br /> double nRot2AreaMax;<br /> double nRot2AreaStep;<br /> double nRot2Delta;<br /> double nRot2Start;<br /> <br /> int nRot3;<br /> int nRot3Step;<br /> double nRot3AreaMin;<br /> double nRot3AreaMax;<br /> double nRot3AreaStep;<br /> double nRot3Delta;<br /> double nRot3Start;<br /> <br /> int mode;<br /> <br /> lmrcImageAutoRotationCorrelationForManyReferencesStackOrder StackOrder;<br /> lmrcImageAutoRotationCorrelationForManyReferencesRefinementMode RefinementMode;<br /> <br /> char* In;<br /> FILE* fptOutASC; /* a file pointer for logging */<br /> char* Out;<br /> mrcImage out;<br /> <br /> /* for Linear Correlation */ <br /> char* corFile;<br /> mrcImage cor;<br /> char* fitFile;<br /> mrcImage fittedMap;<br /> <br /> /* for Set mode correlation */ <br /> char* corFile2;<br /> mrcImage cor2;<br /> char* fitFile2;<br /> mrcImage fittedMap2;<br /> <br /> } lmrcImageAutoRotationCorrelationForManyReferencesInfo;<br /> <br /> ===Only when installed PVM===<br /> #ifdef PVM<br /> typedef struct lmrcImageCorrelationPVMInfo {<br /> int* tids;<br /> int numTask;<br /> } lmrcImageCorrelationPVMInfo;<br /> #endif<br /> <br /> == API ==<br /> AutoRotationCorrelation<br /> extern void lmrcImageAutoRotationCorrelation(mrcImage* out, mrcImage* cor, mrcImage* in, mrcImage* ref, lmrcImageAutoRotationCorrelationInfo* linfo, int mode);<br /> extern void lmrcImageAutoRotationCorrelationRotationalCrossCorrelationFunction(mrcImage* out, mrcImage* cor, mrcImage* in, mrcImage* ref, lmrcImageAutoRotationCorrelationInfo* linfo, int mode);<br /> extern double lmrcImageLinearCorrelation(mrcImage* in1, mrcImage* in2, long mode);<br /> extern void lmrcImageCorrelation(mrcImage* cor, mrcImage* in, mrcImage* ref, long mode);<br /> extern double lmrcImageEuclidDistanceCalc(mrcImage* in1, mrcImage* in2, int mode); <br /> extern void lmrcImageCorrelationRefinement(mrcImage* cor, mrcImage* shift, mrcImage* in, mrcImage* ref, lmrcImageCorrelationRefinementInfo* info, long mode);<br /> <br /> When using multiple Reference files<br /> extern void lmrcImageAutoRotationCorretionForManyReferences(mrcImage* in, mrcImage* ref,<br /> lmrcImageAutoRotationCorrelationForManyReferencesInfo* info,<br /> lmrcImageAutoRotationCorrelationInfo* linfo,<br /> int mode);<br /> <br /> ===Only when installed PVM===<br /> #ifdef PVM<br /> extern void lmrcImageCorrelationServerStart(lmrcImageCorrelationPVMInfo* linfo, FILE* fpt, int numTask);<br /> extern void lmrcImageCorrelationServerEnd(lmrcImageCorrelationPVMInfo linfo);<br /> <br /> extern void lmrcImageCorrelationPVMStart(mrcImage* in, mrcImage* ref, lmrcImageAutoRotationCorrelationInfo* linfo, int tid, long mode);<br /> extern void lmrcImageCorrelationPVMEnd(mrcImage* out, mrcImage* cor, lmrcImageAutoRotationCorrelationInfo* linfo, int tid, long mode);<br /> <br /> extern void lmrcImageCorrelationServer();<br /> <br /> extern void lmrcImageAutoRotationCorrelationInfoSendByPVM(lmrcImageAutoRotationCorrelationInfo* linfo, int tid, long mode);<br /> extern void lmrcImageAutoRotationCorrelationInfoRecieveByPVM(lmrcImageAutoRotationCorrelationInfo* linfo, int tid, long mode);<br /> #endif</div>

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