Kinoshita: Created page with "DataManip/mrcImage/src/'''lmrcImageSymmetryFind''' is API for Symmetry Analysis of image. It is used by mrcImageSymmetryFind, mrcImageSymmetryCentreFind. == constant..."

2014-09-04T00:52:27Z

Created page with "DataManip/mrcImage/src/'''lmrcImageSymmetryFind''' is API for Symmetry Analysis of image. It is used by mrcImageSymmetryFind, mrcImageSymmetryCentreFind. == constant..."

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DataManip/mrcImage/src/'''lmrcImageSymmetryFind''' is API for Symmetry Analysis of image. It is used by [[mrcImageSymmetryFind]], [[mrcImageSymmetryCentreFind]].

== constant ==
lmrcImageSymmetryFindInfo's member: value as centreMode
typedef enum lmrcImageSymmetryFindCheckType {
lmrcImageSymmetryFindCheckTypeCheckByAdd=1,
lmrcImageSymmetryFindCheckTypeCheckByCorrelation=2,
lmrcImageSymmetryFindCheckTypeCheckByFourier=4,
lmrcImageSymmetryFindCheckTypeCheckByTTest=8,
lmrcImageSymmetryFindCheckTypeCheckBySRP=16
} lmrcImageSymmetryFindCheckType;

lmrcImageSymmetryFindInfo's member: value as centreInfo
typedef enum lmrcImageSymmetryFindCentreType {
lmrcImageSymmetryFindCheckTypeCentreGC = 0,
lmrcImageSymmetryFindCheckTypeCentreSymmetry = 1
} lmrcImageSymmetryFindCentreType;

lmrcImageSymmetryFindInfo's member: value as subtractionMode
typedef enum lmrcImageSymmetryFindSubtractionType {
lmrcImageSymmetryFindCheckTypeNoSubtraction = 0,
lmrcImageSymmetryFindCheckTypeMeanSubtraction = 1,
lmrcImageSymmetryFindCheckTypeMinSubtraction = 2
} lmrcImageSymmetryFindSubtractionType;

== struct ==
Setting data for this API
typedef struct lmrcImageSymmetryFindInfo {
double dr;
double dtheta;
double threshold1;
double threshold2;
int minNfold;
int maxNfold;

/* Centre */
lmrcImageSymmetryFindCentreType centreMode;
lmrcImageDeterminationOfPolarAxisByAssumingNfoldInfo centreInfo;

lmrcImageSymmetryFindSubtractionType subtractionMode; /* Subtraction Mode */
int flagImages;
mrcImage Image;
mrcImage* Images;
int flagBacks;
mrcImage Back;
mrcImage* Backs;

floatVector Value;
floatVector Point;
int Symmetry;

FILE* fptOut;

int flagCorrelation;
mrcImage correlation;

int flagFourier;
mrcImage fourier;

int flagTmap;
mrcImage tmap;

int flagAvg;
mrcImage avg;
char* avgName;
DescartesCoord centre;
} lmrcImageSymmetryFindInfo;

== API ==
===Center coordinates===
extern void
lmrcImageSymmetryCentreFind(mrcImage* in, DescartesCoord* centre, int mode);

===Symmetry Analysis===
extern void
lmrcImageSymmetryFind(mrcImage* in, lmrcImageSymmetryFindInfo* linfo, int mode);
Symmetry analyse as the following method. (combinable)
<table border="1">
<tr>
<th>Value</th>
<th>Method</th>
<th>Used Function</th>
</tr>
<tr>
<td>+1</td>
<td>Addition</td>
<td>lmrcImageSymmetryFindCheckByAdd</td>
</tr>
<tr>
<td>+2</td>
<td>Correlation</td>
<td>lmrcImageSymmetryFindCheckByCorrelation</td>
</tr>
<tr>
<td>+4</td>
<td>Fourier Transformation</td>
<td>lmrcImageSymmetryFindCheckByFourier</td>
</tr>
<tr>
<td>+8</td>
<td>t-Test</td>
<td>lmrcImageSymmetryFindCheckByTTest</td>
</tr>
<tr>
<td>+16</td>
<td>SRP</td>
<td>lmrcImageSymmetryFindCheckBySRP</td>
</tr>
</table>
<br>

====Addition====
extern void
lmrcImageSymmetryFindCheckByAdd(mrcImage* in, lmrcImageSymmetryFindInfo* linfo, int mode);

====Correlation====
extern void
lmrcImageSymmetryFindCheckByCorrelation(mrcImage* in, lmrcImageSymmetryFindInfo* linfo, int mode);

====Fourier Transformation====
extern void
lmrcImageSymmetryFindCheckByFourier(mrcImage* in, lmrcImageSymmetryFindInfo* linfo, int mode);

====t-Test====
extern void
lmrcImageSymmetryFindCheckByTTest(mrcImage* in, lmrcImageSymmetryFindInfo* linfo, int mode);

====SRP====
Not implemented
extern void
lmrcImageSymmetryFindCheckBySRP(mrcImage* in, lmrcImageSymmetryFindInfo* linfo, int mode);

====Preprocess====
=====Subtraction=====
extern void
lmrcImageSymmetryFindSubtraction(mrcImage* subout, mrcImage* in, lmrcImageSymmetryFindInfo* info, int mode);
Subtract depending on info->subtractionMode.
<table border="1">
<tr>
<th>Value</th>
<th>Preprocess</th>
</tr>
<tr>
<td>lmrcImageSymmetryFindCheckTypeNoSubtraction</td>
<td>Not subtract</td>
</tr>
<tr>
<td>lmrcImageSymmetryFindCheckTypeMeanSubtraction</td>
<td>Subtract mean value</td>
</tr>
<tr>
<td>lmrcImageSymmetryFindCheckTypeMinSubtraction</td>
<td>Subtract minmum value</td>
</tr>
</table>
<br>

====Output result====
Output result of symmetry analysis as [[ASCII]]
extern void
lmrcImageSymmetryFindResultOut(FILE* fpt, mrcImage* in, lmrcImageSymmetryFindInfo* linfo, int mode);

Output Average image with Input image.
extern void
lmrcImageSymmetryAverage(mrcImage* out, mrcImage* in, int num, DescartesCoord centre, int mode);

===Output API Information===
extern void
lmrcImageSymmetryFindModePrint(FILE* fpt);

lmrcImageSymmetryFind(API) - Revision history

Kinoshita: Created page with "DataManip/mrcImage/src/'''lmrcImageSymmetryFind''' is API for Symmetry Analysis of image. It is used by mrcImageSymmetryFind, mrcImageSymmetryCentreFind. == constant..."