mrcFFTExpression - Revision history

Kinoshita: Created page with "'''mrcFFTExpression''' is Eos's Command that expresses the power spectrum of mrcImage(FFT). == List of option == === Main option === ..."
2014-07-15T07:13:40Z
Created page with "'''mrcFFTExpression''' is Eos's Command that expresses the power spectrum of mrcImage(FFT). == List of option == === Main option === <table border="1"> <tr>..."
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'''mrcFFTExpression''' is [[Eos]]'s [[Command]] that expresses the power spectrum of [[mrcImage]](FFT).

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]](FFT)</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-T</td>
<td>Optional</td>
<td>Threshold to calculate.(For mode 1 and 3.)</td>
<td>1e-16 </td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>
<br>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>Amplitude</td>
</tr>
<tr>
<td>1</td>
<td>LogAmplitude</td>
</tr>
<tr>
<td>2</td>
<td>Power</td>
</tr>
<tr>
<td>3</td>
<td>LogPower</td>
</tr>
<tr>
<td>4</td>
<td>Phase</td>
</tr>
<tr>
<td>5</td>
<td>Real</td>
</tr>
</table>
<br>

== Execution example ==
===Input file's Data===
<pre>
N : ( 70, 70, 100)
Mode : 4 mrcComplexFloatFT
StartN : ( 0, 0, 0)
M : ( 1, 1, 1)
Length : ( 5.000, 5.000, 5.000)
A,B,G : ( 90.00, 90.00, 90.00)
C,R,S : ( 1, 2, 3)
Min,Max,Mean : ( 5.84e-05, 269, 0.18)
ISPG : 0
NSYMBT : 0
</pre>

=== Example of options only essential ===
<table>
<tr>
<td>[[File:Outdata-mrcFFTExpression.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 1)<br>
269.463 (35, 35, 0)<br>
0.00687432<br>
0.567547<br>
0.000810781<br></p>
</td>
</tr>
</table>

===Option -m===
====Case: m=1====
<table>
<tr>
<td>[[File:Outdata-m1-mrcFFTExpression.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-2.80814 (8, 4, 0)<br>
2.4305 (35, 35, 0)<br>
-0.00650123<br>
0.0842947<br>
0.000120421<br></p>
</td>
</tr>
</table>
<br>

====Case: m=1, T=0.2====
<table>
<tr>
<td>[[File:Outdata-m1T-mrcFFTExpression.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.349485 (0, 0, 0)<br>
2.4305 (35, 35, 0)<br>
-0.00264303<br>
0.0349298<br>
4.98998e-05<br></p>
</td>
</tr>
</table>
<br>

====Case: m=2====
<table>
<tr>
<td>[[FIle:Outdata-m2-mrcFFTExpression.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 1)<br>
72610.2 (35, 35, 0)<br>
0.322157<br>
117.178<br>
0.167398<br></p>
</td>
</tr>
</table>
<br>

====Case: m=3====
<table>
<tr>
<td>[[File:Outdata-m3-mrcFFTExpression.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-5.61628 (8, 4, 0)<br>
4.861 (35, 35, 0)<br>
-0.0130025<br>
0.168589<br>
0.000240842<br></p>
</td>
</tr>
</table>

====Case: m=3, T=0.2====
<table>
<tr>
<td>[[File:Outdata-m3T-mrcFFTExpression.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.69897 (0, 0, 0)<br>
4.861 (35, 35, 0)<br>
-0.00528606<br>
0.0698597<br>
9.97996e-05<br></p>
</td>
</tr>
</table>
<br>

====Case: m=4====
<table>
<tr>
<td>[[File:Outdata-m4-mrcFFTExpression.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-3.14151 (5, 63, 0)<br>
3.14151 (65, 7, 0)<br>
5.12525e-05<br>
0.217631<br>
0.000310902<br></p>
</td>
</tr>
</table>
<br>

====Case: m=5====
<table>
<tr>
<td>[[File:Outdata-m5-mrcFFTExpression.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-159.06 (34, 35, 0)<br>
269.463 (35, 35, 0)<br>
1.2537e-06<br>
0.567472<br>
0.000810675<br></p>
</td>
</tr>
</table>
<br>