mrcImage1dShiftByCorrelation - Revision history

Kinoshita: Created page with "'''mrcImage1dShiftByCorrelation''' is Eos's Command. == List of option == === Main option ===

Option Essential/Op..."
2014-07-16T01:57:28Z

Created page with "'''mrcImage1dShiftByCorrelation''' is Eos's Command. == List of option == === Main option === <table border="1"> <tr> <th>Option</th> <th>Essential/Op..."

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'''mrcImage1dShiftByCorrelation''' is [[Eos]]'s [[Command]].

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-r</td>
<td>Essential</td>
<td>Reference: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-range</td>
<td>Optional</td>
<td>Search range of shift.</td>
<td>0</td>
</tr>
<tr>
<td>-s</td>
<td>Essential</td>
<td>File to define position of signal: [[ASCII]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-d</td>
<td>Optional</td>
<td>Spacing of molecule(Pixel)</td>
<td>1.0</td>
</tr>
<tr>
<td>-norm</td>
<td>Optional</td>
<td>Normalize before correlation</td>
<td></td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>
<br>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>Phase residual</td>
</tr>
<tr>
<td>1</td>
<td>Normal correlation</td>
</tr>
</table>
<br>

===-s format===
<pre>
sigpos0 sigval0
sigpos1 sigval1
.
.

</pre>
<br>

== Execution example ==
===[[:Media:Input-1VOM-N-1D.mrc|Input file]]'s image===
<table>
<tr>
<td>[[File:Input-1VOM-N-1D.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-24564.9 (1, 0, 0)<br>
1.12206e+06 (40, 0, 0)<br>
577190<br>
290698<br>
22981.7<br></p>
</td>
</tr>
</table>
<br>

===[[:Media:Input-1VOM-1D.mrc|Reference file]]'s image===
<table>
<tr>
<td>[[File:Input-1VOM-1D.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">9528.98 (1, 0, 0)<br>
1.05166e+06 (41, 0, 0)<br>
577032<br>
281935<br>
22288.9<br></p>
</td>
</tr>
</table>
<br>

===-s data===
<pre>
0 1
1 1

</pre>
<br>

=== Example of options only essential ===
<div>Output</div>
<pre>
start1
corstart
0 -0.0184223
1 -0.0573648
2 -0.0963073
3 -0.13525
4 -0.174192

...

35 -1.38141
36 -1.42035
37 -1.45929
38 -1.49824
39 -1.53718

...

75 -0.17629
76 -0.137348
77 -0.0984052
78 -0.0594627
79 -0.0205202
Input-1VOM-N-1D.mrc Input-1VOM-1D.mrc 0.000000 -0.0184223
</pre>
<br>

=== Option -range===
====Case: range=40====
<div>Output</div>
<pre>
start1
corstart
0 -0.0184223
1 -0.0573648
2 -0.0963073
3 -0.13525
4 -0.174192

...

35 -1.38141
36 -1.42035
37 -1.45929
38 -1.49824
39 -1.53718
Input-1VOM-N-1D.mrc Input-1VOM-1D.mrc 0.000000 -0.0184223
</pre>
<br>

=== Option -d===
====Case: d=0.5====
<div>Output</div>
<pre>
start1
corstart
0 -0.0184223
0.5 -0.0378935
1 -0.0573648
1.5 -0.076836
2 -0.0963073
2.5 -0.115779
3 -0.13525
3.5 -0.154721
4 -0.174192

...

35 -1.38141
35.5 -1.40088
36 -1.42035
36.5 -1.43982
37 -1.45929
37.5 -1.47877
38 -1.49824
38.5 -1.51771
39 -1.53718
39.5 -1.55665
Input-1VOM-N-1D.mrc Input-1VOM-1D.mrc 0.000000 -0.0184223
</pre>
<br>

=== Option -norm===
<div>Output</div>
<pre>
0 -0.0371553
1 -0.115694
2 -0.194234
3 -0.272774
4 -0.351314

...

75 -0.355545
76 -0.277005
77 -0.198465
78 -0.119926
79 -0.0413864
Input-1VOM-N-1D.mrc Input-1VOM-1D.mrc 0.000000 -0.0371553
</pre>
<br>

=== Option -m===
====Case: m=1====
<div>Output</div>
<pre>
start1
corstart
0 0.999919
1 0.999344
2 0.998179
3 0.996434
4 0.994119

...

75 0.993978
76 0.996324
77 0.9981
78 0.999296
79 0.999903
Input-1VOM-N-1D.mrc Input-1VOM-1D.mrc 0.000000 0.999919
</pre>
<br>