mrcImage3DWindowing - Revision history

Kinoshita: Created page with "'''mrcImage3DWindowing''' is Eos's Command that multiplies windowing function to mrcImage(3D). == List of option == === Main option === <..."
2014-07-16T05:51:59Z
Created page with "'''mrcImage3DWindowing''' is Eos's Command that multiplies windowing function to mrcImage(3D). == List of option == === Main option === <table border="1"> <..."
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'''mrcImage3DWindowing''' is [[Eos]]'s [[Command]] that multiplies windowing function to [[mrcImage]](3D).

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]](3D)</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-center</td>
<td>Optional</td>
<td>Center: (cx, cy, cz)</td>
<td>(0, 0, 0)</td>
</tr>
<tr>
<td>-w</td>
<td>Optional</td>
<td>Width: (wx, wy, wz)</td>
<td>(0, 0 , 0)</td>
</tr>
<tr>
<td>-r</td>
<td>Optional</td>
<td>Radius</td>
<td>0</td>
</tr>
<tr>
<td>-wr</td>
<td>Optional</td>
<td>Width for R</td>
<td>0</td>
</tr>
<tr>
<td>-wz</td>
<td>Optional</td>
<td>Width for z</td>
<td>0</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>GaussianRectangularSolid</td>
</tr>
<tr>
<td>1</td>
<td>CosCylindar(+Offset)</td>
</tr>
<tr>
<td>2</td>
<td>CosSphere</td>
</tr>
<tr>
<td>3</td>
<td>CosSphere(+Offset)</td>
</tr>
</table>

== Execution example ==
=== Input file's image ===
<table>
<tr>
<td>[[File:Input-mrcImage3DWindowing.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0<br>
2<br>
0.384947<br>
0.605556<br>
0.00086508<br></p>
</td>
</tr>
</table>

=== Example of options only essential ===
<table>
<tr>
<td></td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0<br>
0<br>
nan<br>
nan<br>
nan<br></p>
</td>
</tr>
</table>

<div>Since the default w=(0, 0, 0), nothing is output</div>

=== Option -w===
when m=0,
====Case: w=(30, 30, 30)====
Setting the width of each direction of the Gaussian function to -w. (Width is 1 / e for each direction)
<table>
<tr>
<td>[[File:Outdata-w30-mrcImage3DWindowing.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0<br>
1.01888<br>
0.0335928<br>
0.0897063<br>
0.000128152<br></p>
</td>
</tr>
</table>

=== Option -center===
====Case: w=(30, 30, 30), center=(50, 50, 50)====
<table>
<tr>
<td>[[File:Outdata-w30-center50-mrcImage3DWindowing.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0<br>
1.97241<br>
0.211832<br>
0.358028<br>
0.000511469<br></p>
</td>
</tr>
</table>

=== Option -m===
====Case: m=1, w=(30, 30, 30), center=(50, 50, 50)====
=====Case: No other settings=====
<table>
<tr>
<td>[[File:Outdata-m1-mrcImage3DWindowing.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.384876<br>
1.61512<br>
0.000101475<br>
0.0101141<br>
1.44488e-05<br></p>
</td>
</tr>
</table>

=====Case: r=10=====
<table>
<tr>
<td>[[File:Outdata-m1r-mrcImage3DWindowing.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.37003<br>
1.62997 <br>
0.0205337<br>
0.160314<br>
0.00022902<br></p>
</td>
</tr>
</table>

=====Case: wr=10=====
<table>
<tr>
<td>[[File:Outdata-m1wr-mrcImage3DWindowing.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.192438<br>
0.807562<br>
0.000716062<br>
0.0127312<br>
1.81875e-05<br></p>
</td>
</tr>
</table>

=====Case: wz=10, r=10=====
<table>
<tr>
<td>[[File:Outdata-m1wz-mrcImage3DWindowing.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.37003 <br>
1.62997 <br>
0.0203072<br>
0.156551<br>
0.000223645<br></p>
</td>
</tr>
</table>

====Case: m=2, w=(30, 30, 30), center=(50, 50, 50)====
=====Case: No other settings=====
<table>
<tr>
<td></td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0<br>
0<br>
nan<br>
nan<br>
nan<br></p>
</td>
</tr>
</table>

=====Case: r=20=====
<table>
<tr>
<td>[[File:Outdata-m2r-mrcImage3DWindowing.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0<br>
2<br>
0.0551567<br>
0.263582<br>
0.000376545<br></p>
</td>
</tr>
</table>

=====Case: wr=30=====
<table>
<tr>
<td>[[File:Outdata-m2wr-mrcImage3DWindowing.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0<br>
2<br>
0.0264886<br>
0.18454<br>
0.000263629<br></p>
</td>
</tr>
</table>

====Case: m=3====
=====Case: No other settings=====
<table>
<tr>
<td>[[File:Outdata-m3-mrcImage3DWindowing.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0<br>
0.815055<br>
1.66338e-06<br>
0.00116436<br>
1.66338e-06<br></p>
</td>
</tr>
</table>

=====Case: r=20=====
<table>
<tr>
<td>[[File:Outdata-m3r-mrcImage3DWindowing.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.353868<br>
1.64613<br>
0.0310787<br>
0.202673<br>
0.000289533<br></p>
</td>
</tr>
</table>

=====Case: wr=30, r=20=====
<table>
<tr>
<td>[[File:Outdata-m3wr-mrcImage3DWindowing.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.352732<br>
1.64613<br>
0.035894<br>
0.168266<br>
0.000240379<br></p>
</td>
</tr>
</table>