Kinoshita: Created page with "'''mrcImageAbnormalValueRemove''' is Eos's Command that removes the outliers in the electron micrographs. The outliers in the electron micrographs in the case ..."

2014-07-16T06:25:10Z

Created page with "'''mrcImageAbnormalValueRemove''' is Eos's Command that removes the outliers in the electron micrographs. The outliers in the electron micrographs in the case ..."

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'''mrcImageAbnormalValueRemove''' is [[Eos]]'s [[Command]] that removes the outliers in the [[electron micrographs]]. The outliers in the [[electron micrographs]] in the case of many is due to individual difference of elements of [[CCD camera]], [[Ice]] of [[Crystallization]]. It is possible to reduce adverse effects on the [[Image Processing]] (e.g. [[CTF Correction]]) using this [[Command]].

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>NULL</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-v</td>
<td>Optional</td>
<td></td>
<td>3.0</td>
</tr>
<tr>
<td>-u</td>
<td>Optional</td>
<td></td>
<td>UnsignedMax(65535) UnsignedHalf(16384)</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>Random Value </td>
</tr>
<tr>
<td>1</td>
<td>Near Value</td>
</tr>
<tr>
<td>2</td>
<td>Random Value using SD and mean within Normal Area</td>
</tr>
<tr>
<td>3</td>
<td>Mean Value using SD and mean within Normal Area</td>
</tr>
</table>

== Execution example ==
=== Input file's image ===
<table>
<tr>
<td>[[File:B120-2-mrcImageAbnormalValueRemove.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>-65.0178 
94.4699 
4.85274 
20.4635 
0.255794 
</td>
</tr>
</table>

=== Example of options only essential ===
<table>
<tr>
<td>[[File:B120-2.outdata-mrcImageAbnormalValueRemove.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>-56.108 
66.0024 
4.49193 
19.7521 
0.246901 
</td>
</tr>
</table>

=== Option -v===
====Case: v=1====
<table>
<tr>
<td>[[File:B120-2.outdata-v1-mrcImageAbnormalValueRemove.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>-62.7258 
74.644 
4.1715 
14.3336 
0.17917 
</td>
</tr>
</table>

====Case: v=5====
<table>
<tr>
<td>[[File:B120-2.outdata-v5-mrcImageAbnormalValueRemove.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>-65.0178 
94.4699 
4.85274 
20.4635 
0.255794 
</td>
</tr>
</table>

=== Option -mode===
====Case: mode=0====
<table>
<tr>
<td>[[File:B120-2.outdata-mrcImageAbnormalValueRemove.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>-56.108 
66.0024 
4.49193 
19.7521 
0.246901 
</td>
</tr>
</table>

====Case: mode=1====
<table>
<tr>
<td>[[File:B120-2.outdata-m1-mrcImageAbnormalValueRemove.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>-56.108 
66.0024 
4.6678 
19.8468 
0.248085 
</td>
</tr>
</table>

mrcImageAbnormalValueRemove - Revision history

Kinoshita: Created page with "'''mrcImageAbnormalValueRemove''' is Eos's Command that removes the outliers in the electron micrographs. The outliers in the electron micrographs in the case ..."