mrcImageAreaCalc - Revision history

Kinoshita: Created page with "'''mrcImageAreaCalc''' is Eos's Command that calculate the area and volume using the image binarized. == List of option ==

Option
2014-07-16T07:38:22Z

Created page with "'''mrcImageAreaCalc''' is Eos's Command that calculate the area and volume using the image binarized. == List of option == <table border="1"> <tr> <th>Option</..."

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'''mrcImageAreaCalc''' is [[Eos]]'s [[Command]] that calculate the area and volume using the image binarized.

== List of option ==
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-O</td>
<td>Optional</td>
<td>Output the number of pixels of maximum area: [[ASCII]]</td>
<td>stdout</td>
</tr>
<tr>
<td>-l</td>
<td>Optional</td>
<td>Labeling: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

== Execution example ==
=== Input file's image ===
<table>
<tr>
<td>[[File:B120-mrcImageAreaCalc.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0<br>
65.5929<br>
5.45036<br>
12.3043<br>
0.153804<br></p>
</td>
<td>Using the image binarized<br>
　　－－－－－－＞</td>
<td>[[File:Bin.m0t45-mrcImageAreaCalc.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0<br>
1<br>
0.0220312<br>
0.146785<br>
0.00183481<br></p>
</td>
</tr>
</table>

===Output -o===
<table>
<tr>
<td>[[File:A.labe.binm0t45-mrcImageAreaCalc.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0<br>
107<br>
1.85047<br>
13.7374<br>
0.00183481<br></p>
</td>
<td>Set region of maximum area to 1. <br>
And set other to the ratio of its region. </td>
</tr>
</table>

===Option -O===
Specify the output destination in the options as follows.<br>
In this case, "a.bin.m0t45.center.info2" is the destination.<br>
<br>
In terms of using cat command this destination.<br>
<pre>
MaxRegion: 107.000000
</pre>
The number of pixels of the area of maximum is out as described above.<br>

===Option -l===
have the same functionality as [[mrcImageLabeling]].<br>
Output destination is the destination specified in the option -I.

<table>
<tr>
<td>[[File:Outdata2-mrcImageAreaCalc.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0<br>
9<br>
0.0596875<br>
0.603272<br>
0.0075409<br></p>
</td>
</tr>
</table>