mrcImageAutoFilamentExtractResultAnalysis - Revision history

Kinoshita: Created page with "'''mrcImageAutoFilamentExtractResultAnalysis''' is Eos's Command. == List of option == === Main option ===
2014-07-16T08:29:49Z

Created page with "'''mrcImageAutoFilamentExtractResultAnalysis''' is Eos's Command. == List of option == === Main option === <table border="1"> <tr> <th>Option</th> <th..."

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'''mrcImageAutoFilamentExtractResultAnalysis''' is [[Eos]]'s [[Command]].

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Optional</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-truePitch</td>
<td>Optional</td>
<td>True Pitch</td>
<td>430</td>
</tr>
<tr>
<td>-PixelSize</td>
<td>Optional</td>
<td>Pixel Size [A]</td>
<td>5</td>
</tr>
<tr>
<td>-deltadY</td>
<td>Optional</td>
<td>A range of deltadY to determine dY.</td>
<td>0.5</td>
</tr>
<tr>
<td>-y</td>
<td>Optional</td>
<td>y [pixel] for final extraction</td>
<td>0</td>
</tr>
<tr>
<td>-Mag</td>
<td>Optional</td>
<td>magnification ratio</td>
<td>1.1</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>
<div>-i, -o: Input file names can be up to 100 characters about together.</div>
<div>-deltadY is not implemented.</div>
<br>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</table>
<br>

== Execution example ==
===[[Media:Input-AutoFilament.mrc | Input file]] image===
<table>
<tr>
<td>[[File:Input-AutoFilament.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (65, 0, 0)<br>
10.8167 (60, 12, 0)<br>
0.752281<br>
1.80953<br>
0.0207349<br></p>
</td>
</tr>
</table>
<br>

=== Option -y===
<div>Since the 0 default of -y, it is necessary to set.</div>

====Case: y=30====
<table>
<tr>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
0 (0, 0, 0)<br>
0<br>
0<br>
0<br></p>
</td>
</tr>
</table>
<br>

<div>In the following, Setting aty=30.</div>
=== Option -truePitch===
====Case: truePitch=250====
<table>
<tr>
<td>[[File:Outdata-truePitch-mrcImageAutoFilamentExtractResultAnalysis.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-2.19053 (114, 47, 0)<br>
10.5375 (52, 43, 0)<br>
0.600831<br>
1.53525<br>
0.0200725<br></p>
</td>
</tr>
</table>
<br>

=== Option -PixelSize===
====Case: PixelSize=10====
<table>
<tr>
<td>[[File:Outdata-mrcImageAutoFilamentExtractResultAnalysis.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-1.92139 (25, 13, 0)<br>
10.8001 (99, 37, 0)<br>
0.601505<br>
1.53942<br>
0.0233594<br></p>
</td>
</tr>
</table>
<br>

=== Option -Mag===
====Case: Mag=0.4====
<table>
<tr>
<td>[[File:Outdata-Mag-mrcImageAutoFilamentExtractResultAnalysis.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-2.30451 (198, 81, 0)<br>
11.0425 (198, 75, 0)<br>
0.601022<br>
1.53561<br>
0.0116508<br></p>
</td>
</tr>
</table>
<br>

Option