Kinoshita: /* Execution example */

2014-07-30T05:10:22Z

‎Execution example

Kinoshita: /* Main option */

2014-07-30T05:10:04Z

‎Main option

Kinoshita at 01:49, 17 July 2014

2014-07-17T01:49:25Z

Kinoshita: Created page with "'''mrcImageAutoRotationCorrelation3D''' is Eos's Command that calculates the correlation value of the three-dimensional data between mrcImage files. It decides the..."

2014-07-17T01:49:12Z

Created page with "'''mrcImageAutoRotationCorrelation3D''' is Eos's Command that calculates the correlation value of the three-dimensional data between mrcImage files. It decides the..."

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'''mrcImageAutoRotationCorrelation3D''' is [[Eos]]'s [[Command]] that calculates the correlation value of the three-dimensional data between [[mrcImage]] files. It decides the direction of the three-dimensional image that best fits with respect to the reference image. thus, it is possible to output an image that is suited best for them.

== Algorithm ==
Find the angle of rotation of rotating a three-dimensional image of reference, best fit on the basis of the correlation value. Correlation value with the function system some. It has been calculated that by seeking a correlation function from the calculation of the Fourier space basically to search the maximum value.

== List of option ==
It is an argument of the following is required. -i/-r is an essential argument.

=== Main option ===
<table border="1">
<div align="left">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]](Input file)</td>
<td>NULL</td>
</tr>
<tr>
<td>-r</td>
<td>Essential</td>
<td>Input: [[mrcImage]](Reference file)</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Optional</td>
<td>Output: Parameter</td>
<td>stdout(The standard output by default)</td>
</tr>
<tr>
<td>-cor</td>
<td>Optional</td>
<td>Output: Correlation map: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-fit</td>
<td>Optional</td>
<td>Output: RotatedImage at Maximum: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-EA</td>
<td>Optional</td>
<td>Input: mode of [[Euler angle]]: 4 characters</td>
<td>YOYS</td>
</tr>
<tr>
<td>-Rot1</td>
<td>Optional</td>
<td>Input: range of Rot1([[Euler angle]]):min max delta</td>
<td>0.0 360.0 5.0</td>
</tr>
<tr>
<td>-Rot2</td>
<td>Optional</td>
<td>Input: range of Rot2([[Euler angle]]):min max delta</td>
<td>0.0 180.0 5.0</td>
</tr>
<tr>
<td>-Rot3</td>
<td>Optional</td>
<td>Input: range of Rot3([[Euler angle]]):min max delta</td>
<td>0.0 360.0 5.0</td>
</tr>
<tr>
<td>-Xrange</td>
<td>Optional</td>
<td>Input: x: min max: [pixel]</td>
<td>0 0 (The full range of the X-direction by default)</td>
</tr>
<tr>
<td>-Yrange</td>
<td>Optional</td>
<td>Input: y: min max: [pixel]</td>
<td>0 0 (The full range of the Y-direction by default)</td>
</tr>
<tr>
<td>-Zrange</td>
<td>Optional</td>
<td>Input: z: min max: [pixel]</td>
<td>0 0 (The full range of the Z-direction by default)</td>
</tr>
<tr>
<td>-M</td>
<td>Optional</td>
<td>Input: Selection mode of the correlation function</td>
<td>0</td>
</tr>
<tr>
<td>-MR</td>
<td>Optional</td>
<td>Input: Handling mode of image rotation</td>
<td>0</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Input: Interpolation mode of the image</td>
<td>0</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</div>
</table>

=== mode's details ===
==== -MR details ====
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>padding 0</td>
</tr>
<tr>
<td>1</td>
<td>padding average </td>
</tr>
<tr>
<td>+0</td>
<td>within ellipsoidal area</td>
</tr>
<tr>
<td>+16</td>
<td>within square area</td>
</tr>
</table>
<div>If it is considered around the medium as a single particle, it is recommended to 0. 
16 is recommended otherwise.(For example, when there is an image to ambient.)</div>

==== -M details ====
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>Normal Correlation FxG*</td>
</tr>
<tr>
<td>1</td>
<td>Phase Correlation FxG*/ |FxG*|</td>
</tr>
<tr>
<td>2</td>
<td>Phase Correlation FxG*/sqrt(|FxG*|)</td>
</tr>
<tr>
<td>3</td>
<td>Normalized Normal Correlation FxG*/|F||G|)</td>
</tr>
<tr>
<td>16</td>
<td>(0,0) = 0 </td>
</tr>
</table>

=== -m details ===
Setting of [[Interpolation Mode]].
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>Nearest neighbor method</td>
</tr>
<tr>
<td>1</td>
<td>Bi-linear interpolation method</td>
</tr>
<tr>
<td>2</td>
<td>Cubic convolution method</td>
</tr>
</table>
 

== Execution example ==

The following is an example in which combined Reference image "test.ref" to Test image "test.in". Then the result of calculating correlation is stored in the "test.param", "test.cor" is output as Correlation map.
The correlation is performed by rotating reference image at the ranges and deltas of Rot1, Rot2, Rot3. The following cases, Y-axis rotaion(Rot1), X-axis rotaion(Rot2), Z-axis rotaion(Rot3) are in the order of rotation for the [[Euler angle]] is YOYS.
When rotating, it is considered image is included in the whole rectangular, and the outer padding average. The correlation value is calculated from the correlation function (correlation map) by the inverse Fourier transform of the product of the Fourier space(F*G*).Then the movement distance is limited by -Xrange/-Yrange/-Zrange.

$ mrcImageAutoRotationCorrelation3D -i test.in -r test.ref -o test.param -cor test.cor -fit test.fit -EA YOYS -Rot1 -20 20 10 -Rot2 -30 30 15 -Rot3 -10 10 5 -Xrange -1 1 -Yrange -2 2 -Zrange 0 0 -MR 17 -M 16 -m 2

===[[Media:Input-ThickFilaments3-P.mrc | Input file]] image===
<table>
<tr>
<td>[[File:Input-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (1, 1, 0) 
1 (19, 1, 0) 
0.0111612 
0.102481 
0.00114578 
</td>
</tr>
</table>

===[[Media:Input-ThickFilaments4-P.mrc | Reference file]] image===
<table>
<tr>
<td>[[File:Refer-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (1, 1, 0) 
1 (19, 1, 0) 
0.00852714 
0.0897409 
0.00100333 
</td>
</tr>
</table>

=== Option -Rot1, -Rot2, -Rot3===
====Case: Rot1=(0, 360, 30), Rot2=(0, 180, 30), Rot3=(0, 360, 30)====
=====-o data=====
<pre>
Max: YOYS 0.000000 0.000000 0.000000 at -23.000000 -28.000000 -20.000000 Cor 0.140128 -0.006095
Max: YOYS 0.000000 0.000000 30.000001 at -18.000000 -32.000000 -20.000000 Cor 0.157113 -0.005784
Max: YOYS 0.000000 0.000000 90.000003 at -26.000000 -30.000000 -20.000000 Cor 0.178878 -0.006212
Max: YOYS 0.000000 0.000000 149.999997 at -14.000000 -17.000000 -20.000000 Cor 6348069965383335936.000000 -0.005416
Max: YOYS 0.000000 0.000000 210.000013 at -14.000000 -17.000000 -20.000000 Cor 6354297599243059200.000000 -0.005659
Max: YOYS 0.000000 0.000000 270.000001 at -14.000000 -17.000000 -20.000000 Cor 6356619767800922112.000000 -0.006271
Max: YOYS 0.000000 0.000000 330.000016 at -14.000000 -17.000000 -20.000000 Cor 6358941936358785024.000000 0.017826
Max: YOYS 0.000000 30.000001 0.000000 at -14.000000 -17.000000 -20.000000 Cor 6361264104916647936.000000 -0.005977
Max: YOYS 0.000000 30.000001 60.000002 at -14.000000 -17.000000 -20.000000 Cor 6363586273474510848.000000 -0.005946
Max: YOYS 0.000000 30.000001 120.000003 at -14.000000 -17.000000 -20.000000 Cor 6365908442032373760.000000 -0.005885
Max: YOYS 0.000000 30.000001 180.000005 at -13.000000 -17.000000 -20.000000 Cor 36902486550580822016.000000 -0.006037
</pre>

=====-cor image=====
<table>
<tr>
<td>[[File:Outdata-Rot1Rot2Rot3-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0.0804175 (0, 0, 6) 
3.69025e+19 (0, 1, 6) 
6.32628e+18 
1.10996e+18 
3.22712e+16 
</td>
</tr>
</table>

=====-fit image=====
<table>
<tr>
<td>[[File:Outdata2-Rot1Rot2Rot3-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 0, 0) 
1 (15, 13, 1) 
0.00425752 
0.0650531 
0.000727315 
</td>
</tr>
</table>

=== Option -EA===
====Case: EA=ZENS, Rot1=(0, 360, 30), Rot2=(0, 180, 30), Rot3=(0, 360, 30)====
=====-o data=====
<pre>
Max: ZENS 0.000000 0.000000 0.000000 at -23.000000 -28.000000 -20.000000 Cor 0.140128 -0.006095
Max: ZENS 0.000000 0.000000 30.000001 at -18.000000 -32.000000 -20.000000 Cor 0.157113 -0.005784
Max: ZENS 0.000000 0.000000 90.000003 at -26.000000 -30.000000 -20.000000 Cor 0.178878 -0.006212
</pre>

=====-cor image=====
<table>
<tr>
<td>[[File:Outdata-EA-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0.0336148 (1, 4, 0) 
0.178878 (0, 0, 3) 
0.0440549 
0.0119811 
0.00034834 
</td>
</tr>
</table>

=====-fit image=====
<table>
<tr>
<td>[[File:Outdata2--mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 0, 0) 
1 (1, 17, 1) 
0.0045 
0.0669309 
0.000748311 
</td>
</tr>
</table>

=== Option -Xrange, -Yrange, Zrange===
====Case: Xrange=(10, 15), Yrange=(10, 15), Zrange=(10, 15), Rot1=(0, 360, 30), Rot2=(0, 180, 30), Rot3=(0, 360, 30)====
=====-o data=====
<pre>
Max: YOYS 0.000000 0.000000 0.000000 at 0.000000 0.000000 0.000000 Cor 0.033541 0.056044
Max: YOYS 0.000000 0.000000 120.000003 at 14.000000 12.000000 10.000000 Cor 0.033731 0.016596
Max: YOYS 0.000000 0.000000 210.000013 at 14.000000 13.000000 11.000000 Cor 0.033857 -0.005534
Max: YOYS 0.000000 30.000001 299.999995 at 10.000000 14.000000 10.000000 Cor 0.044848 -0.005701
Max: YOYS 0.000000 90.000003 120.000003 at 10.000000 14.000000 10.000000 Cor 0.045006 -0.006493
Max: YOYS 30.000001 149.999997 180.000005 at 13.000000 10.000000 13.000000 Cor 0.045016 0.015388
Max: YOYS 60.000002 0.000000 90.000003 at 12.000000 12.000000 10.000000 Cor 0.045173 -0.006438
Max: YOYS 120.000003 120.000003 30.000001 at 14.000000 12.000000 13.000000 Cor 0.055965 -0.006359
</pre>

=====-cor image=====
<table>
<tr>
<td>[[File:Outdata-range-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0.0114748 (1, 4, 1) 
0.0559651 (4, 4, 1) 
0.0270246 
0.00637686 
0.000185402 
</td>
</tr>
</table>

=====-fit image=====
<table>
<tr>
<td>[[File:Outdata2-range-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 0, 0) 
1 (5, 1, 0) 
0.00500987 
0.0705332 
0.000788586 
</td>
</tr>
</table>

=== Option -MR===
====Case: MR=1, Rot1=(0, 360, 30), Rot2=(0, 180, 30), Rot3=(0, 360, 30)====
=====-o data=====
<pre>
Max: YOYS 0.000000 0.000000 0.000000 at -23.000000 -28.000000 -20.000000 Cor 0.141222 -0.006563
Max: YOYS 0.000000 0.000000 30.000001 at -18.000000 -32.000000 -20.000000 Cor 0.157193 -0.005707
Max: YOYS 0.000000 0.000000 90.000003 at -26.000000 -30.000000 -20.000000 Cor 0.177568 -0.006511
</pre>

=====-cor image=====
<table>
<tr>
<td>[[File:Outdata-MR1-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0.0385571 (7, 1, 4) 
0.177568 (0, 0, 3) 
0.0485775 
0.0100862 
0.000293248 
</td>
</tr>
</table>

=====-fit image=====
<table>
<tr>
<td>[[File:Outdata2-MR1-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 0, 1) 
1 (1, 17, 1) 
0.0107168 
0.0667423 
0.000746202 
</td>
</tr>
</table>

====Case: MR=16, Rot1=(0, 360, 30), Rot2=(0, 180, 30), Rot3=(0, 360, 30)====
=====-o data=====
<pre>
Max: YOYS 0.000000 0.000000 0.000000 at -31.000000 -20.000000 -20.000000 Cor 0.212045 0.003815
</pre>

=====-cor image=====
<table>
<tr>
<td>[[File:Outdata-MR16-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0.0454467 (9, 5, 3) 
0.212045 (0, 0, 0) 
0.0594773 
0.0110256 
0.000320561 
</td>
</tr>
</table>

=====-fit image=====
<table>
<tr>
<td>[[File:Outdata2-MR16-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 1, 0) 
1 (8, 1, 0) 
0.0111612 
0.102481 
0.00114578 
</td>
</tr>
</table>

====Case: MR=17, Rot1=(0, 360, 30), Rot2=(0, 180, 30), Rot3=(0, 360, 30)====
=====-o data=====
<pre>
Max: YOYS 0.000000 0.000000 0.000000 at -31.000000 -20.000000 -20.000000 Cor 0.212045 0.003815
</pre>

=====-cor image=====
<table>
<tr>
<td>[[File:Outdata-MR17-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0.0454467 (9, 5, 3) 
0.212045 (0, 0, 0) 
0.0594773 
0.0110256 
0.000320561 
</td>
</tr>
</table>

=====-fit image=====
<table>
<tr>
<td>[[File:Outdata2-MR17-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 1, 0) 
1 (8, 1, 0) 
0.0111612 
0.102481 
0.00114578 
</td>
</tr>
</table>

=== Option -M===
====Case: M=1, Rot1=(0, 360, 30), Rot2=(0, 180, 30), Rot3=(0, 360, 30)====
=====-o data=====
<pre>
Max: YOYS 0.000000 0.000000 0.000000 at -20.000000 -21.000000 -25.000000 Cor 7.951506 -0.006330
Max: YOYS 0.000000 180.000005 0.000000 at -20.000000 -22.000000 -28.000000 Cor 12.379415 -0.006212
</pre>

=====-cor image=====
<table>
<tr>
<td>[[File:Outdata-M1-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>4.31499 (2, 2, 1) 
12.3794 (0, 6, 0) 
5.69666 
0.775057 
0.0225341 
</td>
</tr>
</table>

=====-fit image=====
<table>
<tr>
<td>[[File:Outdata2-M1-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 0, 0) 
1 (8, 1, 0) 
0.0045 
0.0669309 
0.000748311 
</td>
</tr>
</table>

====Case: M=2, Rot1=(0, 360, 30), Rot2=(0, 180, 30), Rot3=(0, 360, 30)====
=====-o data=====
<pre>
Max: YOYS 0.000000 0.000000 0.000000 at -20.000000 -21.000000 -25.000000 Cor 0.669592 -0.006330
Max: YOYS 0.000000 180.000005 0.000000 at -20.000000 -22.000000 -28.000000 Cor 1.027818 -0.006212
</pre>

=====-cor image=====
<table>
<tr>
<td>[[File:Outdata-M2-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0.350646 (0, 2, 1) 
1.02782 (0, 6, 0) 
0.963981 
0.136232 
0.00396083 
</td>
</tr>
</table>

=====-fit image=====
<table>
<tr>
<td>[[File:Outdata2-M2-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 0, 0) 
1 (8, 1, 0) 
0.0045 
0.0669309 
0.000748311 
</td>
</tr>
</table>

====Case: M=3, Rot1=(0, 360, 30), Rot2=(0, 180, 30), Rot3=(0, 360, 30)====
=====-o data=====
<pre>
Max: YOYS 0.000000 0.000000 0.000000 at -20.000000 -21.000000 -28.000000 Cor 0.218833 -0.006388
Max: YOYS 0.000000 180.000005 0.000000 at -20.000000 -22.000000 -28.000000 Cor 0.328095 -0.006212
Max: YOYS 0.000000 180.000005 60.000002 at -25.000000 -30.000000 -20.000000 Cor 1.000000 -0.006033
</pre>

=====-cor image=====
<table>
<tr>
<td>[[File:Outdata-M3-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0.0938449 (7, 0, 0) 
1 (0, 6, 2) 
0.143836 
0.0360716 
0.00104875 
</td>
</tr>
</table>

=====-fit image=====
<table>
<tr>
<td>[[File:Outdata2-M3-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 0, 0) 
1 (8, 19, 1) 
0.00400752 
0.0631187 
0.000705688 
</td>
</tr>
</table>

====Case: M=16, Rot1=(0, 360, 30), Rot2=(0, 180, 30), Rot3=(0, 360, 30)====
=====-o data=====
<pre>
Max: YOYS 0.000000 0.000000 0.000000 at -23.000000 -28.000000 -20.000000 Cor 0.140128 -0.006095
Max: YOYS 0.000000 0.000000 30.000001 at -18.000000 -32.000000 -20.000000 Cor 0.157113 -0.005784
Max: YOYS 0.000000 0.000000 90.000003 at -26.000000 -30.000000 -20.000000 Cor 0.178878 -0.006212
</pre>

=====-cor image=====
<table>
<tr>
<td>[[File:Outdata-M16-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0.0298141 (7, 0, 0) 
0.178878 (0, 0, 3) 
0.040371 
0.0105544 
0.000306859 
</td>
</tr>
</table>

=====-fit image=====
<table>
<tr>
<td>[[File:Outdata2-M16-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 0, 0) 
1 (1, 17, 1) 
0.0045 
0.0669309 
0.000748311 
</td>
</tr>
</table>

=== Option -m===
====Case: m=1, Rot1=(0, 360, 30), Rot2=(0, 180, 30), Rot3=(0, 360, 30)====
=====-o data=====
<pre>
Max: YOYS 0.000000 0.000000 0.000000 at -23.000000 -28.000000 -20.000000 Cor 0.140128 -0.006095
Max: YOYS 0.000000 0.000000 30.000001 at -18.000000 -32.000000 -20.000000 Cor 0.158153 -0.008176
Max: YOYS 0.000000 0.000000 90.000003 at -26.000000 -30.000000 -20.000000 Cor 0.178878 -0.006212
</pre>

=====-cor image=====
<table>
<tr>
<td>[[File:Outdata-m1-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0.0176277 (1, 5, 4) 
0.178878 (0, 0, 3) 
0.0280273 
0.0115913 
0.000337007 
</td>
</tr>
</table>

=====-fit image=====
<table>
<tr>
<td>[[File:Outdata2-m1-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 0, 0) 
1 (1, 17, 1) 
0.0045 
0.0669309 
0.000748311 
</td>
</tr>
</table>

====Case: m=2, Rot1=(0, 360, 30), Rot2=(0, 180, 30), Rot3=(0, 360, 30)====
=====-o data=====
<pre>
Max: YOYS 0.000000 0.000000 0.000000 at -23.000000 -28.000000 -20.000000 Cor 0.140128 -0.006095
Max: YOYS 0.000000 0.000000 30.000001 at -18.000000 -32.000000 -20.000000 Cor 0.151922 -0.006019
Max: YOYS 0.000000 0.000000 90.000003 at -26.000000 -30.000000 -20.000000 Cor 0.178878 -0.006212
</pre>

=====-cor image=====
<table>
<tr>
<td>[[File:Outdata-m2-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0.0256789 (8, 5, 7) 
0.178878 (0, 0, 3) 
0.0361763 
0.0103279 
0.000300277 
</td>
</tr>
</table>

=====-fit image=====
<table>
<tr>
<td>[[File:Outdata2-m2-mrcImageAutoRotationCorrelation3D.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>-4.76837e-07 (10, 14, 9) 
1 (1, 17, 1) 
0.0045 
0.0669309 
0.000748311 
</td>
</tr>
</table>

== References ==

← Older revision		Revision as of 01:49, 17 July 2014
Line 1:		Line 1:
−	'''mrcImageAutoRotationCorrelation3D''' is [[Eos]]'s [[Command]] that calculates the correlation value of the three-dimensional data between [[mrcImage]] files. It decides the direction of the three-dimensional image that best fits with respect to the reference image. ~~thus~~, it is possible to output an image that is suited best for them.	+	'''mrcImageAutoRotationCorrelation3D''' is [[Eos]]'s [[Command]] that calculates the correlation value of the three-dimensional data between [[mrcImage]] files. It decides the direction of the three-dimensional image that best fits with respect to the reference image. Thus, it is possible to output an image that is suited best for them.

	== Algorithm ==		== Algorithm ==

@@ Line 203: / Line 203: @@
 The following is an example in which combined Reference image "test.ref" to Test image "test.in". Then the result of calculating correlation is stored in the "test.param", "test.cor" is output as Correlation map.
-The correlation is performed by rotating reference image at the ranges and deltas of Rot1, Rot2, Rot3. The following cases, Y-axis rotaion(Rot1), X-axis rotaion(Rot2), Z-axis rotaion(Rot3) are in the order of rotation for the [[Euler angle]] is YOYS.
+The correlation is performed by rotating reference image at the ranges and deltas of Rot1, Rot2, Rot3. The following cases, Y-axis rotaion(Rot1), X-axis rotaion(Rot2), Z-axis rotaion(Rot3) are in the order of rotation for the [[Euler Angle]] is YOYS.
 When rotating, it is considered image is included in the whole rectangular, and the outer padding average. The correlation value is calculated from the correlation function (correlation map)  by the inverse Fourier transform of the product of the Fourier space(F*G*).Then the movement distance is limited by -Xrange/-Yrange/-Zrange.
@@ Line 822: / Line 822: @@
 			</td>
 		</tr>
 	</table>
-−
 == References ==

@@ Line 49: / Line 49: @@
 				<td>-EA</td>
 				<td>Optional</td>
-				<td>Input: mode of [[Euler angle]]: 4 characters</td>
+				<td>Input: mode of [[Euler Angle]]: 4 characters</td>
 				<td>YOYS</td>
 			</tr>
@@ Line 55: / Line 55: @@
 				<td>-Rot1</td>
 				<td>Optional</td>
-				<td>Input: range of Rot1([[Euler angle]]):min max delta</td>
+				<td>Input: range of Rot1([[Euler Angle]]):min max delta</td>
 				<td>0.0 360.0 5.0</td>
 			</tr>
@@ Line 61: / Line 61: @@
 				<td>-Rot2</td>
 				<td>Optional</td>
-				<td>Input: range of Rot2([[Euler angle]]):min max delta</td>
+				<td>Input: range of Rot2([[Euler Angle]]):min max delta</td>
 				<td>0.0 180.0 5.0</td>
 			</tr>
@@ Line 67: / Line 67: @@
 				<td>-Rot3</td>
 				<td>Optional</td>
-				<td>Input: range of Rot3([[Euler angle]]):min max delta</td>
+				<td>Input: range of Rot3([[Euler Angle]]):min max delta</td>
 				<td>0.0 360.0 5.0</td>
 			</tr>

mrcImageAutoRotationCorrelation3D - Revision history

Kinoshita: /* Execution example */

Kinoshita: /* Main option */

Kinoshita at 01:49, 17 July 2014

Kinoshita: Created page with "'''mrcImageAutoRotationCorrelation3D''' is Eos's Command that calculates the correlation value of the three-dimensional data between mrcImage files. It decides the..."