Kinoshita: Created page with "'''mrcImageBinalization''' is Eos's Command that performs binalization to mrcImage. (In Additional, threshold specified, Ohtsu method ...) == List of option == =..."

2014-07-17T23:43:37Z

Created page with "'''mrcImageBinalization''' is Eos's Command that performs binalization to mrcImage. (In Additional, threshold specified, Ohtsu method ...) == List of option == =..."

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'''mrcImageBinalization''' is [[Eos]]'s [[Command]] that performs binalization to [[mrcImage]]. (In Additional, threshold specified, Ohtsu method ...)

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-t</td>
<td>Optional</td>
<td>Value of threshold</td>
<td>0</td>
</tr>
<tr>
<td>-v</td>
<td>Optional</td>
<td>value</td>
<td>0</td>
</tr>
<tr>
<td>-near</td>
<td>Optional</td>
<td>Near[pixel]: Near-area also binary</td>
<td>0</td>
</tr>
<tr>
<td>-nLevel</td>
<td>Optional</td>
<td>nLevel: For creating histgram by Kittler and Ohtsu </td>
<td>256</td>
</tr>
<tr>
<td>-p</td>
<td>Optional</td>
<td>p</td>
<td>0.5</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>Under thresHold, 0. Above thresHold, 1.</td>
</tr>
<tr>
<td>1</td>
<td>Above thresHold, 0. Under thresHold, 1.</td>
</tr>
<tr>
<td>2</td>
<td>Under thresHold, value. Above thresHold, unchanged.</td>
</tr>
<tr>
<td>3</td>
<td>Above thresHold, value. Under thresHold, unchanged.</td>
</tr>
<tr>
<td>16</td>
<td>Automatically Determine threshold by Kittler Method</td>
</tr>
<tr>
<td>32</td>
<td>Automatically Determine threshold by Ohtsu Method</td>
</tr>
<tr>
<td>48</td>
<td>Automatically Determine threshold by p-tile Method (p range: 0.0 - 1.0) 
p range: 0.0 - 1.0</td>
</tr>
<tr>
<td>64</td>
<td>Automatically Determine threshold by Differential-Histogram Method</td>
</tr>
<tr>
<td>80</td>
<td>Automatically Determine threshold by Laplacian-Histogram Method</td>
</tr>
</table>

== Execution example ==
=== Input file's image ===
<table>
<tr>
<td>[[File:Input-mrcImageBinalization.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 
255 
21.0538 
47.6709 
0.595886 
</td>
</tr>
</table>

=== Example of options only essential ===
<table>
<tr>
<td>[[File:Outdata-mrcImageBinalization.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>1 
1 
1 
0 
0 
</td>
</tr>
</table>

=== Option -t===
====Case: t=20====
<table>
<tr>
<td>[[File:Outdata-t20-mrcImageBinalization.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 
1 
0.200313 
0.400234 
0.00500293 
</td>
</tr>
</table>

=== Option -near===
====Case: near=5, t=20====
<table>
<tr>
<td>[[File:Outdata-near5t20-mrcImageBinalization.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 
1 
0.333125 
0.471331 
0.00589164 
</td>
</tr>
</table>

=== Option -m===
====Case: m=1, t=20====
<table>
<tr>
<td>[[File:Outdata-m1t20-mrcImageBinalization.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 
1 
0.800937 
0.399295 
0.00499119 
</td>
</tr>
</table>

====Case: m=2, t=50====
<table>
<tr>
<td>[[File:Outdata-m2t50-mrcImageBinalization.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 
255 
19.1695 
47.8459 
0.598074 
</td>
</tr>
</table>

====Case: m=2, t=50, v=255 ====
<table>
<tr>
<td>[[File:Outdata-m2t50v255-mrcImageBinalization.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>50 
255 
234.047 
51.6961 
0.646201 
</td>
</tr>
</table>

====Case: m=3, t=50====
<table>
<tr>
<td>[[File:Outdata-m3t50-mrcImageBinalization.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 
50 
1.97797 
7.73614 
0.0967017 
</td>
</tr>
</table>

====Case: m=3, t=50, v=255 ====
<table>
<tr>
<td>[[File:Outdata-m3t50v255-mrcImageBinalization.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 
255 
41.6225 
91.8732 
1.14841 
</td>
</tr>
</table>

====Case: m=16====
<table>
<tr>
<td>[[File:Outdata-m16-mrcImageBinalization.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 
1 
0.256719 
0.436823 
0.00546029 
</td>
</tr>
</table>

====Case: m=32====
<table>
<tr>
<td>[[File:Outdata-m32-mrcImageBinalization.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 
1 
0.135937 
0.342722 
0.00428403 
</td>
</tr>
</table>

====Case: m=48====
<table>
<tr>
<td>[[File:Outdata-m48-mrcImageBinalization.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>1 
1 
1 
0 
0 
</td>
</tr>
</table>

====Case: m=48, p=0.1====
<table>
<tr>
<td>[[File:Outdata-m48p0.1-mrcImageBinalization.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 
1 
0.100781 
0.301039 
0.00376299 
</td>
</tr>
</table>

====Case: m=64====
<table>
<tr>
<td>[[File:Outdata-m64-mrcImageBinalization.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 
1 
0.0646875 
0.245974 
0.00307467 
</td>
</tr>
</table>

====Case: m=80====
<table>
<tr>
<td>[[File:Outdata-m80-mrcImageBinalization.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 
1 
0.140937 
0.347957 
0.00434946 
</td>
</tr>
</table>

mrcImageBinalization - Revision history

Kinoshita: Created page with "'''mrcImageBinalization''' is Eos's Command that performs binalization to mrcImage. (In Additional, threshold specified, Ohtsu method ...) == List of option == =..."