http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?action=history&feed=atom&title=mrcImageCTFCompensationForTiltImage
mrcImageCTFCompensationForTiltImage - Revision history
2026-05-04T12:17:33Z
Revision history for this page on the wiki
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http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=mrcImageCTFCompensationForTiltImage&diff=4622&oldid=prev
Kinoshita: /* Main option */
2015-02-12T03:58:43Z
<p><span dir="auto"><span class="autocomment">Main option</span></span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 03:58, 12 February 2015</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td>-i</td>  </div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td>-i</td>  </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td>Essential</td>  </div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td>Essential</td>  </div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> <td>Input: [[mrcImage]]</td>  </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> <td>Input: [[mrcImage]]<ins class="diffchange diffchange-inline">(for file size only)</ins></td>  </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td>NULL</td>  </div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td>NULL</td>  </div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> </tr>  </div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> </tr>  </div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </table>  </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </table></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>=== -m details ===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>=== -m details ===</div></td></tr>
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Kinoshita
http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=mrcImageCTFCompensationForTiltImage&diff=252&oldid=prev
Kinoshita at 01:40, 18 July 2014
2014-07-18T01:40:28Z
<p></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 01:40, 18 July 2014</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 1:</td>
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<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>'''mrcImageCTFCompensationForTiltImage''' is [[Eos]]'s [[Command]] that performs [[CTF Correction]] [[Tilt image]].</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>'''mrcImageCTFCompensationForTiltImage''' is [[Eos]]'s [[Command]] that performs [[CTF Correction]] <ins class="diffchange diffchange-inline">for </ins>[[Tilt image]].</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
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Kinoshita
http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=mrcImageCTFCompensationForTiltImage&diff=251&oldid=prev
Kinoshita: Created page with "'''mrcImageCTFCompensationForTiltImage''' is Eos's Command that performs CTF Correction Tilt image. == List of option == === Main option === <table border=..."
2014-07-18T01:40:03Z
<p>Created page with "'''mrcImageCTFCompensationForTiltImage''' is <a href="/Eos/index.php/Eos" title="Eos">Eos</a>'s <a href="/Eos/index.php/Command" title="Command">Command</a> that performs <a href="/Eos/index.php/CTF_Correction" title="CTF Correction">CTF Correction</a> <a href="/Eos/index.php?title=Tilt_image&action=edit&redlink=1" class="new" title="Tilt image (page does not exist)">Tilt image</a>. == List of option == === Main option === <table border=..."</p>
<p><b>New page</b></p><div>'''mrcImageCTFCompensationForTiltImage''' is [[Eos]]'s [[Command]] that performs [[CTF Correction]] [[Tilt image]].<br />
<br />
<br />
== List of option ==<br />
=== Main option ===<br />
<table border="1"><br />
<tr> <br />
<th>Option</th> <br />
<th>Essential/Optional</th> <br />
<th>Description</th> <br />
<th>Default</th> <br />
</tr> <br />
<tr> <br />
<td>-i</td> <br />
<td>Essential</td> <br />
<td>Input: [[mrcImage]]</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-I</td> <br />
<td>Essential</td> <br />
<td>ROI information: [[ASCII]]</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-o</td> <br />
<td>Essential</td> <br />
<td>Output: [[mrcImage]]([[CTF]])</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-cut</td> <br />
<td>Optional</td> <br />
<td>Range with no compensation (The number of pixels from the center)</td> <br />
<td>6</td> <br />
</tr> <br />
<tr> <br />
<td>-c</td> <br />
<td>Optional</td> <br />
<td>ConfigurationFile</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-m</td> <br />
<td>Optional</td> <br />
<td>Mode</td> <br />
<td>0</td> <br />
</tr> <br />
<tr> <br />
<td>-h</td> <br />
<td>Optional</td> <br />
<td>Help</td> <br />
<td> </td> <br />
</tr> <br />
</table> <br />
<br />
=== -m details ===<br />
<table border="1"><br />
<tr> <br />
<th>Value</th> <br />
<th>Description</th> <br />
</tr> <br />
<tr> <br />
<td>0</td> <br />
<td></td> <br />
</tr> <br />
</table> <br />
<br />
===-I format===<br />
<div>cf [[mrcImageROIs]] about ROI information's format.</div><br />
<br />
<br />
== Execution example ==<br />
===Input file's data===<br />
====-i image====<br />
<table> <br />
<tr> <br />
<td>[[File:Input-mrcImageCTFCompensationForTiltImage.png]]</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">0 (0, 0, 0)<br> <br />
255 (49, 32, 0)<br> <br />
21.0538<br> <br />
47.6709<br> <br />
0.595886<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br />
<br />
====-I data====<br />
<pre><br />
/Eos/img/ROISet0/inputnoise-0000.roi Rect 6 6 26 6 26 26 6 26<br />
/Eos/img/ROISet0/inputnoise-0001.roi Rect 20 6 40 6 40 26 20 26<br />
/Eos/img/ROISet0/inputnoise-0002.roi Rect 40 6 60 6 60 26 40 26<br />
/Eos/img/ROISet0/inputnoise-0003.roi Rect 54 6 74 6 74 26 54 26<br />
/Eos/img/ROISet0/inputnoise-0004.roi Rect 6 20 26 20 26 40 6 40<br />
/Eos/img/ROISet0/inputnoise-0005.roi Rect 20 20 40 20 40 40 20 40<br />
/Eos/img/ROISet0/inputnoise-0006.roi Rect 40 20 60 20 60 40 40 40<br />
/Eos/img/ROISet0/inputnoise-0007.roi Rect 54 20 74 20 74 40 54 40<br />
/Eos/img/ROISet0/inputnoise-0008.roi Rect 6 40 26 40 26 60 6 60<br />
/Eos/img/ROISet0/inputnoise-0009.roi Rect 20 40 40 40 40 60 20 60<br />
/Eos/img/ROISet0/inputnoise-0010.roi Rect 40 40 60 40 60 60 40 60<br />
/Eos/img/ROISet0/inputnoise-0011.roi Rect 54 40 74 40 74 60 54 60<br />
/Eos/img/ROISet0/inputnoise-0012.roi Rect 6 54 26 54 26 74 6 74<br />
/Eos/img/ROISet0/inputnoise-0013.roi Rect 20 54 40 54 40 74 20 74<br />
/Eos/img/ROISet0/inputnoise-0014.roi Rect 40 54 60 54 60 74 40 74<br />
/Eos/img/ROISet0/inputnoise-0015.roi Rect 54 54 74 54 74 74 54 74<br />
<br />
</pre><br />
<br />
Using ROI files: [[Media:Input-ROISet0.zip | Input file]]<br />
<br />
<br />
=== Example of options only essential ===<br />
<table> <br />
<tr> <br />
<td>[[File:Outdata-mrcImageCTFCompensationForTiltImage.png]]</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">1 (7, 7, 0)<br> <br />
255 (22, 7, 0)<br> <br />
155.874<br> <br />
73.4908<br> <br />
0.918635<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br />
<br />
=== Option -cut===<br />
====Case: cut=20==== <br />
<table> <br />
<tr> <br />
<td>[[File:Outdata-cut-mrcImageCTFCompensationForTiltImage.png]]</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">0.01 (7, 7, 0)<br> <br />
255 (25, 20, 0)<br> <br />
118.004<br> <br />
59.0793<br> <br />
0.738491<br></p> <br />
</td> <br />
</tr> <br />
</table></div>
Kinoshita