Kinoshita: /* Case: No other settings */

2014-07-18T02:10:44Z

‎Case: No other settings

Kinoshita: Created page with "'''mrcImageCTFSN''' is Eos's Command. == List of option == === Main option === ..."
2014-07-18T02:10:27Z
Created page with "'''mrcImageCTFSN''' is Eos's Command. == List of option == === Main option === <table border="1"> <tr> <th>Option</th> <th>Essential/Optional</th> ..."
New page
'''mrcImageCTFSN''' is [[Eos]]'s [[Command]].

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]](FFT)</td>
<td>stdin</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]](FFT)</td>
<td>stdout</td>
</tr>
<tr>
<td>-kV</td>
<td>Optional</td>
<td>[[Acceleration voltage]]: [kV]</td>
<td>200</td>
</tr>
<tr>
<td>-Cs</td>
<td>Optional</td>
<td>[[Spherical aberration coefficient]]: [mm]</td>
<td>1.7</td>
</tr>
<tr>
<td>-df</td>
<td>Essential</td>
<td>Defocus(under is +): [A]</td>
<td>2.7</td>
</tr>
<tr>
<td>-n1</td>
<td>Optional</td>
<td>Degree of zero point minimum</td>
<td>2</td>
</tr>
<tr>
<td>-n2</td>
<td>Optional</td>
<td>Degree of zero point maximum</td>
<td>4</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</table>

== Execution example ==
===[[Media:Input-B120-CTF.fft | Input file]] image===
<table>
<tr>
<td>[[File:Input-B120-CTF.png]] 
<td>Size 
Mode 
Min 
Max 
Mean 
SD 
SE 
</td>
<td>( 80, 80, 1) 
mrcComplexFloatFT 
0.000514398 (78, 51, 0) 
1684.3 (0, 0, 0) 
9.67542 
65.3969 
0.817461 
</td>
</tr>
</table>
 

===df=27000===
====Case: No other settings====
<table>
<tr>
<td>[[File:Outdata-mrcImageCTFSN.png]]</td>
<td>Size 
Mode 
Min 
Max 
Mean 
SD 
SE 
</td>
<td>( 80, 80, 1) 
mrcComplexFloatFT 
0.00798281 (13, 0, 0) 
147968 (40, 40, 0) 
867.722 
4251.35 
53.1419 
</td>
</tr>
</table>
 

<div>In the following, Setting atdf=27000で実行</div>
 

=== Option -kV===
====Case: kV=100====
<table>
<tr>
<td>[[File:Outdata-kV-mrcImageCTFSN.png]]</td>
<td>Size 
Mode 
Min 
Max 
Mean 
SD 
SE 
</td>
<td>( 80, 80, 1) 
mrcComplexFloatFT 
0.073218 (12, 0, 0) 
648.392 (0, 0, 0) 
2.75844 
21.3399 
0.266748 
</td>
</tr>
</table>
 

=== Option -Cs===
====Case: Cs=2.7====
<table>
<tr>
<td>[[File:Outdata-Cs-mrcImageCTFSN.png]]</td>
<td>Size 
Mode 
Min 
Max 
Mean 
SD 
SE 
</td>
<td>( 80, 80, 1) 
mrcComplexFloatFT 
0.00664789 (13, 0, 0) 
145982 (40, 40, 0) 
857.727 
4197.01 
52.4626 
</td>
</tr>
</table>
 

=== Option -n1, -n2===
====Case: n1=1, n2=7====
<table>
<tr>
<td>[[File:Outdata-n1n2-mrcImageCTFSN.png]]</td>
<td>Size 
Mode 
Min 
Max 
Mean 
SD 
SE 
</td>
<td>( 80, 80, 1) 
mrcComplexFloatFT 
0.0463626 (18, 0, 0) 
90.1676 (40, 40, 0) 
3.89085 
4.36334 
0.0545418 
</td>
</tr>
</table>
 

Option Essential/Optional

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 <br>
-<div>In the following, Setting atdf=27000で実行</div>
+<div>In the following, Setting atdf=27000.</div>
 <br>