mrcImageCenterDensityChange - Revision history

Kinoshita: Created page with "'''mrcImageCenterDensityChange''' is Eos's Command that changes the density of the central image. == List of option == === Main option ===
2014-07-23T00:12:47Z

Created page with "'''mrcImageCenterDensityChange''' is Eos's Command that changes the density of the central image. == List of option == === Main option === <table border="1"> <tr..."

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'''mrcImageCenterDensityChange''' is [[Eos]]'s [[Command]] that changes the density of the central image.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>NULL</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-rmin</td>
<td>Optional</td>
<td>min radius[A]</td>
<td>0</td>
</tr>
<tr>
<td>-rmax</td>
<td>Optional</td>
<td>max radius[A]</td>
<td>90</td>
</tr>
<tr>
<td>-ratio</td>
<td>Optional</td>
<td>ratio</td>
<td>0</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-M</td>
<td>Optional</td>
<td>radius's mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

===-m details===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>multiply</td>
</tr>
</table>

===-M details===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>change density from r=0 to r=rmin <br>
then connect density gradually from rmin to rmax</td>
</tr>
<tr>
<td>1</td>
<td>connect density gradually from rmin to rmax<br>
change density more than rmax</td>
</tr>
</table>

== Execution example ==
=== Input file's image ===
<table>
<tr>
<td>[[File:B120-2-mrcImageCenterDensityChange.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-65.0178<br>
94.4699<br>
4.85274<br>
20.4635<br>
0.255794<br></p>
</td>
</tr>
</table>

=== Example of options only essential ===
<table>
<tr>
<td>[[File:B120-2.out-mrcImageCenterDensityChange.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-46.3548<br>
47.1617<br>
0.978803<br>
10.6117<br>
0.132646<br></p>
</td>
</tr>
</table>

=== Option -rmin -rmax===
====rmin=0,rmax=20====
<table>
<tr>
<td>[[File:B120-2.out-rmin0rmax20-mrcImageCenterDensityChange.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-65.0178<br>
90.3544<br>
3.91091<br>
18.9057<br>
0.236321<br></p>
</td>
</tr>
</table>

====rmin=0,rmax=40====
<table>
<tr>
<td>[[File:B120-2.out-rmin0rmax40-mrcImageCenterDensityChange.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-65.0178<br>
63.9001<br>
2.31387<br>
16.5103<br>
0.206379<br></p>
</td>
</tr>
</table>

====rmin=10,rmax=100====
<table>
<tr>
<td>[[File:B120-2.out-rmin10rmax100-mrcImageCenterDensityChange.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-41.1337<br>
40.9722<br>
0.47082<br>
8.72736<br>
0.109092<br></p>
</td>
</tr>
</table>

====rmin=30,rmax=100====
<table>
<tr>
<td>[[File:B120-2.out-rmin30rmax100-mrcImageCenterDensityChange.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-39.4606<br>
36.8629<br>
-0.0582201<br>
6.94833<br>
0.0868542<br></p>
</td>
</tr>
</table>

=== Option -ratio===
====ratio=5====
<table>
<tr>
<td>[[File:B120-2.out-ratio5-mrcImageCenterDensityChange.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-179.995<br>
441.288<br>
20.3485<br>
69.0916<br>
0.863645<br></p>
</td>
</tr>
</table>

====ratio=10====
<table>
<tr>
<td>[[File:B120-2.out-ratio10-mrcImageCenterDensityChange.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-330.137<br>
874.81<br>
39.7182<br>
131.379<br>
1.64224<br></p>
</td>
</tr>
</table>

=== Option -M===
====M=0====
<table>
<tr>
<td>[[File:B120-2.out-mrcImageCenterDensityChange.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-46.3548<br>
47.1617<br>
0.978803<br>
10.6117<br>
0.132646<br></p>
</td>
</tr>
</table>

====M=1====
<table>
<tr>
<td>[[File:B120-2.out-M1-mrcImageCenterDensityChange.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-46.3548<br>
47.1617<br>
0.953994<br>
10.4203<br>
0.130254<br></p>
</td>
</tr>
</table>