mrcImageCenterGet - Revision history

Kinoshita: Created page with "'''mrcImageCenterGet''' is Eos's Command changes the size of mrcImage file. (Trimming) == List of option == === Main option ===
2014-07-23T00:33:04Z

Created page with "'''mrcImageCenterGet''' is Eos's Command changes the size of mrcImage file. (Trimming) == List of option == === Main option === <table border="1"> <tr> <th..."

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'''mrcImageCenterGet''' is [[Eos]]'s [[Command]] changes the size of [[mrcImage]] file. (Trimming)

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-Nx</td>
<td>Optional</td>
<td>Width of x-axis</td>
<td>0</td>
</tr>
<tr>
<td>-Ny</td>
<td>Optional</td>
<td>Width of y-axis</td>
<td>0</td>
</tr>
<tr>
<td>-Nz</td>
<td>Optional</td>
<td>Width of z-axis</td>
<td>0</td>
</tr>
<tr>
<td>-Cx</td>
<td>Optional</td>
<td>Cetnter x position of extracted image.</td>
<td>0</td>
</tr>
<tr>
<td>-Cy</td>
<td>Optional</td>
<td>Cetnter y position of extracted image.</td>
<td>0</td>
</tr>
<tr>
<td>-Cz</td>
<td>Optional</td>
<td>Cetnter z position of extracted image.</td>
<td>0</td>
</tr>
<tr>
<td>-even</td>
<td>Optional</td>
<td>all dimensions of N are even.</td>
<td>　</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode1</td>
<td>0</td>
</tr>
<tr>
<td>-M</td>
<td>Optional</td>
<td>Mode2</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>
<br>

===-m details===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>By Nearest</td>
</tr>
<tr>
<td>1</td>
<td>By Linear</td>
</tr>
<tr>
<td>2</td>
<td>By Cubic Convolusion</td>
</tr>
</table>
<br>

===-M details===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>Normal Image</td>
</tr>
<tr>
<td>1</td>
<td>Ref Image</td>
</tr>
</table>
<br>

== Execution example ==
=== Input file's image ===
<table>
<tr>
<td>[[File:B120-mrcImageCenterGet.png|thumb|350px|right|Input file]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-79.707<br>
93.0617<br>
0.00118467<br>
16.3973<br>
0.016013<br></p>
</td>
</tr>
</table>

=== Option -Nx,-Ny===
====Case: -Nx 150,-Ny 150====
<div>No setting the -Nz this time, because size of z is 1.</div>
<table>
<tr>
<td>[[File:B120-N150-mrcImageCenterGet.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-64.5759<br>
93.0617<br>
1.46226<br>
17.9703<br>
0.119802<br></p>
</td>
</tr>
</table>

=== Option -Cx,-Cy===
====Case: Nx 150,-Ny 150,-Cx 550 -Cy 550====
<table>
<tr>
<td>[[File:B120-N150C550-mrcImageCenterGet.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-64.5759<br>
93.0617<br>
1.51054<br>
17.9468<br>
0.119645<br></p>
</td>
</tr>
</table>

=== Option -even===
Input file's image<br>
[[File:B120-even-be-mrcImageCenterGet.png]]
<br>
Output file's image<br>
[[File:B120-even-af-mrcImageCenterGet.png]]

===Option -m, -M===
====Case: m=0, M=0====
<table>
<tr>
<td>[[File:B120-N150C550-mrcImageCenterGet.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-64.5759<br>
93.0617<br>
1.51054<br>
17.9468<br>
0.119645<br></p>
</td>
</tr>
</table>
====Case: m=1====
<table>
<tr>
<td>[[File:B120-m1-mrcImageCenterGet.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-31.66<br>
76.5183<br>
1.5093<br>
10.9617<br>
0.0730782<br></p>
</td>
</tr>
</table>
====Case: m=2====
<table>
<tr>
<td>[[File:B120-m2-mrcImageCenterGet.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-52.0282<br>
96.0772<br>
1.51187<br>
15.217<br>
0.101446<br></p>
</td>
</tr>
</table>
====Case: M=1====
<table>
<tr>
<td>[[File:B120-mM1-mrcImageCenterGet.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-31.5983<br>
33.7833<br>
-0.000472438<br>
0.43108<br>
0.00287387<br></p>
</td>
</tr>
</table>

<div>If only essential option, the difference does not appear between the input and output files.</div>