mrcImageCommonLineSearch - Revision history

Kinoshita: Created page with "'''mrcImageCommonLineSearch''' Eos's Command that searches Common Line. == List of option == === Main option ===

2014-07-23T02:04:07Z

Created page with "'''mrcImageCommonLineSearch''' Eos's Command that searches Common Line. == List of option == === Main option === <table border="1"> <div align="left"> <tr..."

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'''mrcImageCommonLineSearch''' [[Eos]]'s [[Command]] that searches [[Common Line]].

== List of option ==
=== Main option ===
<table border="1">
<div align="left">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>NULL</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-r</td>
<td>Essential</td>
<td>Reference: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-dtheta</td>
<td>Optional</td>
<td>Pixel size</td>
<td>1.0</td>
</tr>
<tr>
<td>-o</td>
<td>Optional</td>
<td>Output: OptimalParameter</td>
<td>stdout</td>
</tr>
<tr>
<td>-O</td>
<td>Optional</td>
<td>Output: ParameterImage</td>
<td>NULL</td>
</tr>
<tr>
<td>-M</td>
<td>Optional</td>
<td>SearchMode</td>
<td>1</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>mode/td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</div>
</table>

=== -M details===
<table border="1">
<div align="left">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>CommonLine Search in Fourier Space.</td>
</tr>
<tr>
<td>1</td>
<td>CommonLine Search in Real Space.</td>
</tr>
</div>
</table>

=== -m details ===
<table border="1">
<div align="left">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
<tr>
<td>1</td>
<td>Image Center is Centre of Gravity.</td>
</tr>
</div>
</table>

== Execution example ==
=== Input file's image ===
<table>
<tr>
<td>[[File:121p-1.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0<br>
13<br>
0.155<br>
0.87657<br>
0.0087657<br></p>
</td>
</tr>
</table>

===Reference file's image===
<table>
<tr>
<td>[[File:121p-2.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0<br>
11<br>
0.155<br>
0.874514<br>
0.00874514<br></p>
</td>
</tr>
</table>

<div>Input file is inclined 45 degrees reference file.</div>
<br>

=== Option -M ===
====Case: M=0====
=====Case: m=0=====
<table>
<tr>
<td>[[File:outdata2-M0m0.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.959089<br>
1<br>
0.0408768<br>
0.411404<br>
0.00194978<br></p>
</td>
</tr>
</table>
=====Case: m=1=====
<table>
<tr>
<td>[[File:outdata2-M0m1.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0.916889<br>
1<br>
0.969244<br>
0.0121819<br>
5.7734e-05<br></p>
</td>
</tr>
</table>
<br>

====Case: M=1====
=====Case: m=0=====
<table>
<tr>
<td>[[File:outdata2-M1m0.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-1<br>
1<br>
nan<br>
nan<br>
nan<br></p>
</td>
</tr>
</table>
=====Case: m=1=====
<table>
<tr>
<td>[[File:outdata2-M1m1.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.2438<br>
1<br>
0.633036<br>
0.187172<br>
0.000882887<br></p>
</td>
</tr>
</table>