Kinoshita: /* Example2 */

2014-09-17T06:50:17Z

‎Example2

Kinoshita: /* Option -ikm */

2014-09-17T06:33:27Z

‎Option -ikm

Kinoshita: Created page with "'''mrcImageConvolution''' is Eos's Command that convolutes 2 mrcImages to 1 mrcImage. Array file can be used as kernel file by option -ika. == List of option..."

2014-07-23T02:57:16Z

Created page with "'''mrcImageConvolution''' is Eos's Command that convolutes 2 mrcImages to 1 mrcImage. Array file can be used as kernel file by option -ika. == List of option..."

New page

'''mrcImageConvolution''' is [[Eos]]'s [[Command]] that convolutes 2 [[mrcImage]]s to 1 [[mrcImage]]. Array file can be used as kernel file by option -ika.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-ika</td>
<td>Optional</td>
<td>Input: Array(Kernel): [[ASCII]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-ikm</td>
<td>Optional</td>
<td>Input: [[mrcImage]](Kernel)</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td> </td>
</tr>
</table>

===-ika format===
<pre>
ndim N0 N1 N2 ...
data(0, 0, 0,..., 0) data(1, 0, 0,..., 0) data(2, 0, 0,..., 0) ... data(N0-1, 0, 0,..., 0)
data(0, 1, 0,..., 0) data(1, 1, 0,..., 0) data(2, 1, 0,..., 0) ... data(N0-1, 1, 0,..., 0)
..............................................................
data(0,N1-1, 0,..., 0) data(1,N1-1, 0,..., 0) data(2,N1-1, 0,..., 0) ... data(N0-1,N1-1, 0,..., 0)
data(0, 0, 1,..., 0) data(1, 0, 1,..., 0) data(2, 0, 1,..., 0) ... data(N0-1, 0, 1,..., 0)
..............................................................
data(0,N1-1,N2-1,...,Nndim-1-1) data(1,N1-1,N2-1,...,Nndim-1-1) data(2,N1-1,N2-1,...,Nndim-1-1) ... data(N0-1,N1-1,N2-1,...,Nndim-1-1)

</pre>

== Execution example ==
=== Input file's image ===
====-i image====
<table>
<tr>
<td>[[File:Input-mrcImageConvolution.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
255 (30, 26, 0)<br>
20.6895<br>
47.2143<br>
0.737723<br></p>
</td>
</tr>
</table>

=== Option -ika===
<div>-ika 's data</div>

<div>Input file is [[Media:Input-Array0.txt|sin(xπ/64)sin(-yπ/64)]]</div>
<pre>
3 64 64 1
-0 -0 -0 -0 ... -0
-0 -0.0024076367 -0.0048094731 ... -0.0024076367
.
.
.
-0 -0.0024076367 -0.0048094731 ... -0.0024076367

</pre>
<table>
<tr>
<td><p align="Center">[[File:Input-Array0.png]]<br>
Convert image by [[array2mrc]]<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-1 (32, 32, 0)<br>
-0 (0, 0, 0)<br>
-0.405122<br>
0.293046<br>
0.00457885<br></p>
</td>
</tr>
</table>

<div>-o 's image</div>
<table>
<tr>
<td>[[File:Outdata-ika-mrcImageConvolution.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
255 (25, 13, 0)<br>
48.873<br>
86.5082<br>
1.35169<br></p>
</td>
</tr>
</table>

=== Option -ikm===
<div>-ikm 's image</div>
<table>
<tr>
<td>[[File:Input2-mrcImageConvolution.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
255 (27, 32, 0)<br>
19.0078<br>
47.768<br>
0.746374<br></p>
</td>
</tr>
</table>

<div>-o 's image</div>
<table>
<tr>
<td>[[File:Outdata-mrcImageConvolution.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
255 (25, 4, 0)<br>
116.896<br>
77.8295<br>
1.21609<br></p>
</td>
</tr>
</table>

← Older revision		Revision as of 06:50, 17 September 2014
Line 200:		Line 200:

	==== Example2 ====		==== Example2 ====
		+	[[:Media:Input-B120.mrc\|-i Input file]]'s image<br>
		+	<table>
		+	<tr>
		+	<td>[[File:Input-B120.png]]</td>
		+	<td><p align="left">Min<br>
		+	Max<br>
		+	Mean<br>
		+	SD<br>
		+	SE<br></p>
		+	</td>
		+	<td><p align="left">0 (0, 0, 0)<br>
		+	255 (49, 32, 0)<br>
		+	21.0538<br>
		+	47.6709<br>
		+	0.595886<br></p>
		+	</td>
		+	</tr>
		+	</table>
		+	<br>
		+
		+	[[:Media:Input-GridImage.mrc\|-ikm file]]'s image<br>
		+	<table>
		+	<tr>
		+	<td>[[File:Input-GridImage.png]]</td>
		+	<td><p align="left">Min<br>
		+	Max<br>
		+	Mean<br>
		+	SD<br>
		+	SE<br></p>
		+	</td>
		+	<td><p align="left">0 (0, 0, 0)<br>
		+	1 (16, 16, 0)<br>
		+	0.000976562<br>
		+	0.0312347<br>
		+	0.000122011<br></p>
		+	</td>
		+	</tr>
		+	</table>
		+	<br>
		+
		+	Output file's image<br>
		+	<table>
		+	<tr>
		+	<td>[[File:Outdata-ikm-mrcImageConvolution.png]]</td>
		+	<td><p align="left">Min<br>
		+	Max<br>
		+	Mean<br>
		+	SD<br>
		+	SE<br></p>
		+	</td>
		+	<td><p align="left">0 (0, 0, 0)<br>
		+	310 (33, 20, 0)<br>
		+	128.29<br>
		+	58.4092<br>
		+	0.228161<br></p>
		+	</td>
		+	</tr>
		+	</table>
		+	<br>

@@ Line 158: / Line 158: @@
 === Option -ikm===
 <div>-ikm 's image</div>
 	<table>
@@ Line 176: / Line 177: @@
 		</tr>
 	</table>
+<br>
 <div>-o 's image</div>
@@ Line 196: / Line 197: @@
 		</tr>
 	</table>

mrcImageConvolution - Revision history

Kinoshita: /* Example2 */

Kinoshita: /* Option -ikm */

Kinoshita: Created page with "'''mrcImageConvolution''' is Eos's Command that convolutes 2 mrcImages to 1 mrcImage. Array file can be used as kernel file by option -ika. == List of option..."