Kinoshita: Created page with "'''mrcImageFeatureExtraction''' is Eos's Command that that performs extraction of the feature value(kind of 30 in current) of the image. == List of option == === Mai..."

2014-07-24T04:12:24Z

Created page with "'''mrcImageFeatureExtraction''' is Eos's Command that that performs extraction of the feature value(kind of 30 in current) of the image. == List of option == === Mai..."

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'''mrcImageFeatureExtraction''' is [[Eos]]'s [[Command]] that that performs extraction of the feature value(kind of 30 in current) of the image.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-cr</td>
<td>Optional</td>
<td>Co-Occurrence radius</td>
<td>1</td>
</tr>
<tr>
<td>-ct</td>
<td>Optional</td>
<td>Co-Occurrence theta</td>
<td>0</td>
</tr>
<tr>
<td>-rt</td>
<td>Optional</td>
<td>RunLength theta</td>
<td>0</td>
</tr>
<tr>
<td>-rd</td>
<td>Optional</td>
<td>RunLength devision</td>
<td>4</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

===-o format===
<table border="1">
<tr>
<th>行</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>densityhistgram average</td>
</tr>
<tr>
<td>1</td>
<td>densityhistgram variance</td>
</tr>
<tr>
<td>2</td>
<td>densityhistgram skewness</td>
</tr>
<tr>
<td>3</td>
<td>densityhistgram kurtosis</td>
</tr>
<tr>
<td>4</td>
<td>densityhistgram contrast</td>
</tr>
<tr>
<td>5</td>
<td>densityhistgram energy</td>
</tr>
<tr>
<td>6</td>
<td>densityhistgram entropy</td>
</tr>
<tr>
<td>7</td>
<td>co-occurrence anguler second moment</td>
</tr>
<tr>
<td>8</td>
<td>co-occurrence contrast</td>
</tr>
<tr>
<td>9</td>
<td>co-occurrence correlation</td>
</tr>
<tr>
<td>10</td>
<td>co-occurrence sum of square: variance</td>
</tr>
<tr>
<td>11</td>
<td>co-occurrence inverse difference moment</td>
</tr>
<tr>
<td>12</td>
<td>co-occurrence sum average</td>
</tr>
<tr>
<td>13</td>
<td>co-occurrence sum variance</td>
</tr>
<tr>
<td>14</td>
<td>co-occurrence sum entropy</td>
</tr>
<tr>
<td>15</td>
<td>co-occurrence entropy</td>
</tr>
<tr>
<td>16</td>
<td>co-occurrence difference variance</td>
</tr>
<tr>
<td>17</td>
<td>co-occurrence difference entropy</td>
</tr>
<tr>
<td>18</td>
<td>co-occurrence information measure of correlation 1</td>
</tr>
<tr>
<td>19</td>
<td>co-occurrence information measure of correlation 2</td>
</tr>
<tr>
<td>20</td>
<td>co-occurrence maximal correlation coefficient</td>
</tr>
<tr>
<td>21</td>
<td>difference statistics contrast</td>
</tr>
<tr>
<td>22</td>
<td>difference statistics anguler second moment</td>
</tr>
<tr>
<td>23</td>
<td>difference statistics entropy</td>
</tr>
<tr>
<td>24</td>
<td>difference statistics mean</td>
</tr>
<tr>
<td>25</td>
<td>runlength short runs emphasis</td>
</tr>
<tr>
<td>26</td>
<td>runlength long runs emphasis</td>
</tr>
<tr>
<td>27</td>
<td>runlength gray level nonuniformity</td>
</tr>
<tr>
<td>28</td>
<td>runlength run length nonuniformity</td>
</tr>
<tr>
<td>29</td>
<td>runlength run percentage</td>
</tr>
</table>

== Execution example ==
===[[:Media:Input-1VOM-N-2D.mrc | Input file]] image===
<table>
<tr>
<td>[[File:Input-1VOM-N-2D.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-18651.7 (10, 1, 0)<br>
52942.7 (24, 39, 0)<br>
7214.87<br>
10067.6<br>
125.845<br></p>
</td>
</tr>
</table>
<br>

=== Example of options only essential ===
<div>Output</div>
<pre>
91.996563
1295.891863
0.776016
3.386222
9759.259375
0.008844
2.132293
0.029652
2.924688
0.677156
4.529570
0.500184
10.848437
15.193591
1.155461
1.696806
1.225738
0.622819
-0.144452
0.485025
0.993531
2.924688
0.273089
0.622819
1.303438
0.491227
68.861789
523.786401
310.082040
0.211406
</pre>

<div>Output data by using [[mrcImageMakeDump]]</div>
<pre>
0 0 91.9966
1 0 1295.89
2 0 0.776016
3 0 3.38622
4 0 9759.26
5 0 0.00884414
6 0 2.13229
7 0 0.0296521
8 0 2.92469
9 0 0.677156
10 0 4.52957
11 0 0.500184
12 0 10.8484
13 0 15.1936
14 0 1.15546
15 0 1.69681
16 0 1.22574
17 0 0.622819
18 0 -0.144452
19 0 0.485025
20 0 0.993531
21 0 2.92469
22 0 0.273089
23 0 0.622819
24 0 1.30344
25 0 0.491227
26 0 68.8618
27 0 523.786
28 0 310.082
29 0 0.211406
</pre>
<br>

=== Option -cr===
====Case: cr=2====
<div>Output data by using [[mrcImageMakeDump]]</div>
<pre>
0 0 91.9966
1 0 1295.89
2 0 0.776016
3 0 3.38622
4 0 9759.26
5 0 0.00884414
6 0 2.13229
7 0 0.0281689
8 0 3.50906
9 0 0.612649
10 0 4.52957
11 0 0.474789
12 0 10.8484
13 0 14.6092
14 0 1.15028
15 0 1.72495
16 0 1.47398
17 0 0.654255
18 0 -0.115791
19 0 0.436992
20 0 0.937231
21 0 3.50906
22 0 0.259241
23 0 0.654255
24 0 1.42656
25 0 0.491227
26 0 68.8618
27 0 523.786
28 0 310.082
29 0 0.211406
</pre>
<br>

=== Option -ct===
====Case: ct=10====
<div>Output data by using [[mrcImageMakeDump]]</div>
<pre>
0 0 91.9966
1 0 1295.89
2 0 0.776016
3 0 3.38622
4 0 9759.26
5 0 0.00884414
6 0 2.13229
7 0 0.145147
8 0 0
9 0 1
10 0 4.52957
11 0 1
12 0 10.8484
13 0 18.1183
14 0 0.915479
15 0 0.915479
16 0 0
17 0 -0
18 0 -0.988124
19 0 0.916365
20 0 1
21 0 0
22 0 1
23 0 -0
24 0 0
25 0 0.491227
26 0 68.8618
27 0 523.786
28 0 310.082
29 0 0.211406
</pre>
<br>

=== Option -rt===
====Case: rt=1====
<div>Output data by using [[mrcImageMakeDump]]</div>
<pre>
0 0 91.9966
1 0 1295.89
2 0 0.776016
3 0 3.38622
4 0 9759.26
5 0 0.00884414
6 0 2.13229
7 0 0.0296521
8 0 2.92469
9 0 0.677156
10 0 4.52957
11 0 0.500184
12 0 10.8484
13 0 15.1936
14 0 1.15546
15 0 1.69681
16 0 1.22574
17 0 0.622819
18 0 -0.144452
19 0 0.485025
20 0 0.993531
21 0 2.92469
22 0 0.273089
23 0 0.622819
24 0 1.30344
25 0 0.491227
26 0 68.8618
27 0 523.786
28 0 310.082
29 0 0.211406
</pre>
<br>

=== Option -rt===
====Case: rt=1====
<div>Output data by using [[mrcImageMakeDump]]</div>
<pre>
0 0 91.9966
1 0 1295.89
2 0 0.776016
3 0 3.38622
4 0 9759.26
5 0 0.00884414
6 0 2.13229
7 0 0.0296521
8 0 2.92469
9 0 0.677156
10 0 4.52957
11 0 0.500184
12 0 10.8484
13 0 15.1936
14 0 1.15546
15 0 1.69681
16 0 1.22574
17 0 0.622819
18 0 -0.144452
19 0 0.485025
20 0 0.993531
21 0 2.92469
22 0 0.273089
23 0 0.622819
24 0 1.30344
25 0 0.00015625
26 0 6400
27 0 80
28 0 80
29 0 0.0125
</pre>
<br>

mrcImageFeatureExtraction - Revision history

Kinoshita: Created page with "'''mrcImageFeatureExtraction''' is Eos's Command that that performs extraction of the feature value(kind of 30 in current) of the image. == List of option == === Mai..."