Kinoshita: Created page with "'''mrcImageHelicalAveraging''' is Eos's Command that obtains an image of averaging according to the helical symmetry (continuous spiral). == List of option == === Ma..."

2014-07-25T01:07:42Z

Created page with "'''mrcImageHelicalAveraging''' is Eos's Command that obtains an image of averaging according to the helical symmetry (continuous spiral). == List of option == === Ma..."

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'''mrcImageHelicalAveraging''' is [[Eos]]'s [[Command]] that obtains an image of averaging according to the helical symmetry (continuous spiral).

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-dz</td>
<td>Optional</td>
<td>deltaz [A]</td>
<td>27.3</td>
</tr>
<tr>
<td>-dp</td>
<td>Optional</td>
<td>deltaphi [degree]</td>
<td>-167.143</td>
</tr>
<tr>
<td>-N</td>
<td>Optional</td>
<td>Number of particles to average</td>
<td>1</td>
</tr>
<tr>
<td>-W</td>
<td>Optional</td>
<td>Window size to average [pixel]</td>
<td>1</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>Discrete (-N is needed)</td>
</tr>
<tr>
<td>1</td>
<td>Continuous (-W is needed)</td>
</tr>
<tr>
<td>2</td>
<td>Continuous (-W is needed), Data are weighted by exp(- (dz/W)^2)</td>
</tr>
</table>

== Execution example ==
===[[Media:Input-ThickFilaments1.mrc | Input file]] image===
<table>
<tr>
<td>[[File:Input-mrcImageHelicalAveraging.png]] 
xy-plane 
</td>
<td>[[File:Input1-mrcImageHelicalAveraging.png]] 
yz-plane 
</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 0, 0) 
4.07334 (34, 9, 75) 
0.00164516 
0.0572113 
8.29149e-05 
</td>
</tr>
</table>

=== Example of options only essential ===
<table>
<tr>
<td>[[File:Outdata-mrcImageHelicalAveraging.png]] 
xy-plane 
</td>
<td>[[File:Outdata1-mrcImageHelicalAveraging.png]] 
yz-plane 
</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 0, 0) 
4.07334 (34, 9, 75) 
0.00164516 
0.0572113 
8.29149e-05 
</td>
</tr>
</table>

=== Option -N===
====Case: N=3====
<table>
<tr>
<td>[[File:Outdata-N-mrcImageHelicalAveraging.png]] 
xy-plane 
</td>
<td>[[File:Outdata1-N-mrcImageHelicalAveraging.png]] 
yz-plane 
</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 0, 0) 
10.9537 (59, 35, 0) 
0.164516 
0.912197 
0.0132202 
</td>
</tr>
</table>

=== Option -dz===
====Case: dz=10, N=3====
<table>
<tr>
<td>[[File:Outdata-dz-mrcImageHelicalAveraging.png]] 
xy-plane 
</td>
<td>[[File:Outdata1-dz-mrcImageHelicalAveraging.png]] 
yz-plane 
</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>-0.178582 (10, 26, 64) 
1.35778 (34, 9, 75) 
0.00164845 
0.0325027 
4.71054e-05 
</td>
</tr>
</table>

=== Option -dp===
====Case: dp=100, N=3====
<table>
<tr>
<td>[[File:Outdata-dp-mrcImageHelicalAveraging.png]] 
xy-plane 
</td>
<td>[[File:Outdata1-dp-mrcImageHelicalAveraging.png]] 
yz-plane 
</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>-0.188671 (36, 59, 41) 
1.35778 (34, 9, 75) 
0.00164518 
0.0324603 
4.7044e-05 
</td>
</tr>
</table>

=== Option -m===
====Case: m=1====
=====Case: No other settings=====
<table>
<tr>
<td>[[File:Outdata-m1-mrcImageHelicalAveraging.png]] 
xy-plane 
</td>
<td>[[File:Outdata1-m1-mrcImageHelicalAveraging.png]] 
yz-plane 
</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>-0.592748 (68, 64, 76) 
4.09975 (67, 63, 76) 
0.00566568 
0.1042 
0.000151015 
</td>
</tr>
</table>

=====Case: W=3=====
<table>
<tr>
<td>[[File:Outdata-m1W-mrcImageHelicalAveraging.png]] 
xy-plane 
</td>
<td>[[File:Outdata1-m1W-mrcImageHelicalAveraging.png]] 
yz-plane 
</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>-0.592748 (68, 64, 76) 
4.32666 (1, 67, 44) 
0.0127395 
0.155628 
0.000225548 
</td>
</tr>
</table>

====Case: m=2====
=====Case: No other settings=====
<table>
<tr>
<td>[[File:Outdata-m2-mrcImageHelicalAveraging.png]] 
xy-plane 
</td>
<td>[[File:Outdata1-m2-mrcImageHelicalAveraging.png]] 
yz-plane 
</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>-0.21806 (68, 64, 76) 
4.07334 (34, 9, 75) 
0.00318454 
0.0655606 
9.50153e-05 
</td>
</tr>
</table>

=====Case: W=3=====
<table>
<tr>
<td>[[File:Outdata-m2W-mrcImageHelicalAveraging.png]] 
xy-plane 
</td>
<td>[[File:Outdata1-m2W-mrcImageHelicalAveraging.png]] 
yz-plane 
</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>-0.614633 (38, 8, 36) 
4.23353 (37, 59, 40) 
0.0128319 
0.154935 
0.000224544 
</td>
</tr>
</table>

mrcImageHelicalAveraging - Revision history

Kinoshita: Created page with "'''mrcImageHelicalAveraging''' is Eos's Command that obtains an image of averaging according to the helical symmetry (continuous spiral). == List of option == === Ma..."