http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?action=history&feed=atom&title=mrcImageHelicalMasking 2026-05-04T19:22:27Z Revision history for this page on the wiki MediaWiki 1.23.6 http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=mrcImageHelicalMasking&diff=1404&oldid=prev 2014-07-25T01:27:16Z

<p>Created page with &quot;&#039;&#039;&#039;mrcImageHelicalMasking&#039;&#039;&#039; is <a href="/Eos/index.php/Eos" title="Eos">Eos</a>&#039;s <a href="/Eos/index.php/Command" title="Command">Command</a>. == List of option == === Main option === &lt;table border=&quot;1&quot;&gt; &lt;tr&gt; &lt;th&gt;Option&lt;/th&gt; &lt;th&gt;Essential/Optional...&quot;</p> <p><b>New page</b></p><div>'''mrcImageHelicalMasking''' is [[Eos]]'s [[Command]].<br /> <br /> <br /> == List of option ==<br /> === Main option ===<br /> &lt;table border=&quot;1&quot;&gt;<br /> &lt;tr&gt; <br /> &lt;th&gt;Option&lt;/th&gt; <br /> &lt;th&gt;Essential/Optional&lt;/th&gt; <br /> &lt;th&gt;Description&lt;/th&gt; <br /> &lt;th&gt;Default&lt;/th&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-i&lt;/td&gt; <br /> &lt;td&gt;Essential&lt;/td&gt; <br /> &lt;td&gt;Input: [[mrcImage]]&lt;/td&gt; <br /> &lt;td&gt;NULL&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-o&lt;/td&gt; <br /> &lt;td&gt;Essential&lt;/td&gt; <br /> &lt;td&gt;Output: [[mrcImage]]&lt;/td&gt; <br /> &lt;td&gt;NULL&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-dz&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;deltaz(A)&lt;/td&gt; <br /> &lt;td&gt;27.3&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-dp&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;deltaphi(degree)&lt;/td&gt; <br /> &lt;td&gt;13.84&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-sz&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;startz(pixel)&lt;/td&gt; <br /> &lt;td&gt;0&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-ez&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;endz(pixel)&lt;/td&gt; <br /> &lt;td&gt;0&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-sphi&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;startphi(degree) for masking&lt;/td&gt; <br /> &lt;td&gt;0&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-ephi&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;endphi(degree) for masking&lt;/td&gt; <br /> &lt;td&gt;90&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-v&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;value to pad&lt;/td&gt; <br /> &lt;td&gt;0&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-c&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;ConfigurationFile&lt;/td&gt; <br /> &lt;td&gt;NULL&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-m&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;Mode&lt;/td&gt; <br /> &lt;td&gt;0&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-h&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;Help&lt;/td&gt; <br /> &lt;td&gt;　&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;/table&gt; <br /> <br /> === -m details ===<br /> &lt;table border=&quot;1&quot;&gt;<br /> &lt;tr&gt; <br /> &lt;th&gt;Value&lt;/th&gt; <br /> &lt;th&gt;Description&lt;/th&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;0&lt;/td&gt; <br /> &lt;td&gt;&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;/table&gt; <br /> <br /> <br /> == Execution example ==<br /> ===[[Media:Input-ThickFilaments0.mrc | Input file]] image===<br /> &lt;table&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Input-mrcImageHelicalMasking.png]]&lt;br&gt;<br /> xy-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Input1-mrcImageHelicalMasking.png]]&lt;br&gt;<br /> yz-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt;Min&lt;br&gt; <br /> Max&lt;br&gt; <br /> Mean&lt;br&gt; <br /> SD&lt;br&gt; <br /> SE&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt;0 (0, 0, 0)&lt;br&gt; <br /> 1.4395 (27, 47, 66)&lt;br&gt; <br /> 0.00229354&lt;br&gt; <br /> 0.0487664&lt;br&gt; <br /> 7.0676e-05&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;/table&gt; <br /> <br /> <br /> === Example of options only essential ===<br /> &lt;table&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Outdata-mrcImageHelicalMasking.png]]&lt;br&gt;<br /> xy-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Outdata1-mrcImageHelicalMasking.png]]&lt;br&gt;<br /> yz-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt;Min&lt;br&gt; <br /> Max&lt;br&gt; <br /> Mean&lt;br&gt; <br /> SD&lt;br&gt; <br /> SE&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt;0 (0, 0, 0)&lt;br&gt; <br /> 1.4395 (27, 47, 66)&lt;br&gt; <br /> 0.00229354&lt;br&gt; <br /> 0.0487664&lt;br&gt; <br /> 7.0676e-05&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;/table&gt; <br /> <br /> <br /> === Option -dz===<br /> ====Case: dz=20==== <br /> &lt;table&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Outdata-dz-mrcImageHelicalMasking.png]]&lt;br&gt;<br /> xy-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Outdata1-dz-mrcImageHelicalMasking.png]]&lt;br&gt;<br /> yz-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt;Min&lt;br&gt; <br /> Max&lt;br&gt; <br /> Mean&lt;br&gt; <br /> SD&lt;br&gt; <br /> SE&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt;0 (0, 0, 0)&lt;br&gt; <br /> 1.43952 (47, 41, 66)&lt;br&gt; <br /> 0.00229385&lt;br&gt; <br /> 0.0487736&lt;br&gt; <br /> 7.06863e-05&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;/table&gt;<br /> <br /> <br /> === Option -dp===<br /> ====Case: dp=10==== <br /> &lt;table&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Outdata-dp-mrcImageHelicalMasking.png]]&lt;br&gt;<br /> xy-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Outdata1-dp-mrcImageHelicalMasking.png]]&lt;br&gt;<br /> yz-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt;Min&lt;br&gt; <br /> Max&lt;br&gt; <br /> Mean&lt;br&gt; <br /> SD&lt;br&gt; <br /> SE&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt;0 (0, 0, 0)&lt;br&gt; <br /> 1.43952 (47, 41, 66)&lt;br&gt; <br /> 0.00229131&lt;br&gt; <br /> 0.0487423&lt;br&gt; <br /> 7.06409e-05&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;/table&gt;<br /> <br /> <br /> === Option -sz, -ez===<br /> ====Case: sz=30, ez=60==== <br /> &lt;table&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Outdata-szez-mrcImageHelicalMasking.png]]&lt;br&gt;<br /> xy-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Outdata1-szez-mrcImageHelicalMasking.png]]&lt;br&gt;<br /> yz-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt;Min&lt;br&gt; <br /> Max&lt;br&gt; <br /> Mean&lt;br&gt; <br /> SD&lt;br&gt; <br /> SE&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt;0 (0, 0, 0)&lt;br&gt; <br /> 1.43952 (47, 41, 66)&lt;br&gt; <br /> 0.00258871&lt;br&gt; <br /> 0.0518002&lt;br&gt; <br /> 7.50728e-05&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;/table&gt;<br /> <br /> <br /> === Option -sphi, -ephi===<br /> ====Case: sphi=30, ephi=60==== <br /> &lt;table&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Outdata-sphiephi-mrcImageHelicalMasking.png]]&lt;br&gt;<br /> xy-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Outdata1-sphiephi-mrcImageHelicalMasking.png]]&lt;br&gt;<br /> yz-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt;Min&lt;br&gt; <br /> Max&lt;br&gt; <br /> Mean&lt;br&gt; <br /> SD&lt;br&gt; <br /> SE&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt;0 (0, 0, 0)&lt;br&gt; <br /> 1.4395 (27, 47, 66)&lt;br&gt; <br /> 0.00280684&lt;br&gt; <br /> 0.0539435&lt;br&gt; <br /> 7.8179e-05&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;/table&gt;<br /> <br /> <br /> === Option -v===<br /> ====Case: v=1==== <br /> &lt;table&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Outdata-v1-mrcImageHelicalMasking.png]]&lt;br&gt;<br /> xy-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Outdata1-v1-mrcImageHelicalMasking.png]]&lt;br&gt;<br /> yz-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt;Min&lt;br&gt; <br /> Max&lt;br&gt; <br /> Mean&lt;br&gt; <br /> SD&lt;br&gt; <br /> SE&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt;0 (0, 0, 0)&lt;br&gt; <br /> 1.4395 (27, 47, 66)&lt;br&gt; <br /> 0.252207&lt;br&gt; <br /> 0.434383&lt;br&gt; <br /> 0.000629541&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;/table&gt;</div>

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