mrcImageHelicalMaskingBy2DImage - Revision history

Kinoshita: Created page with "'''mrcImageHelicalMaskingBy2DImage''' is Eos's Command that masks the filament of 3D by 2D image. == List of option == === Main option === <..."
2014-07-25T01:48:16Z
Created page with "'''mrcImageHelicalMaskingBy2DImage''' is Eos's Command that masks the filament of 3D by 2D image. == List of option == === Main option === <table border="1"> <..."
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'''mrcImageHelicalMaskingBy2DImage''' is [[Eos]]'s [[Command]] that masks the filament of 3D by 2D image.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]](3D)</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]](3D)</td>
<td>NULL</td>
</tr>
<tr>
<td>-dz</td>
<td>Optional</td>
<td>deltaz(A)</td>
<td>27.3</td>
</tr>
<tr>
<td>-dp</td>
<td>Optional</td>
<td>deltaphi(degree)</td>
<td>13.84</td>
</tr>
<tr>
<td>-M</td>
<td>Essential</td>
<td>Mask file: [[mrcImage]](2D)</td>
<td>NULL</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</table>

== Execution example ==
===[[Media:Input-ThickFilaments0.mrc | Input file]] image===
<table>
<tr>
<td><p align="Center">[[File:Input-mrcImageHelicalMaskingBy2DImage.png]]<br>
xy-plane<br></p>
</td>
<td><p align="Center">[[File:Input1-mrcImageHelicalMaskingBy2DImage.png]]<br>
yz-plane<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
1.43952 (47, 41, 66)<br>
0.00305596<br>
0.0562718<br>
8.15533e-05<br></p>
</td>
</tr>
</table>

===[[Media:Input-ThickFilaments0-20.mrc|Mask file]] image===
<table>
<tr>
<td>[[File:Mask-mrcImageHelicalMaskingBy2DImage.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
1 (34, 19, 0)<br>
0.0042008<br>
0.0646773<br>
0.000937352<br></p>
</td>
</tr>
</table>

=== Example of options only essential ===
<table>
<tr>
<td><p align="Center">[[File:Outdata-mrcImageHelicalMaskingBy2DImage.png]]<br>
xy-plane<br></p>
</td>
<td><p align="Center">[[File:Outdata1-mrcImageHelicalMaskingBy2DImage.png]]<br>
yz-plane<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-62.5667 (19, 31, 56)<br>
332.11 (23, 24, 33)<br>
0.129677<br>
4.1656<br>
0.00603711<br></p>
</td>
</tr>
</table>

=== Option -dz===
====Case: dz=10====
<table>
<tr>
<td><p align="Center">[[File:Outdata-dz-mrcImageHelicalMaskingBy2DImage.png]]<br>
xy-plane<br></p>
</td>
<td><p align="Center">[[File:Outdata1-dz-mrcImageHelicalMaskingBy2DImage.png]]<br>
yz-plane<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-58.8023 (41, 47, 56)<br>
373.883 (27, 21, 38)<br>
0.131239<br>
4.28449<br>
0.00620941<br></p>
</td>
</tr>
</table>

=== Option -dp===
====Case: dp=20====
<table>
<tr>
<td><p align="Center">[[File:Outdata-dp-mrcImageHelicalMaskingBy2DImage.png]]<br>
xy-plane<br></p>
</td>
<td><p align="Center">[[File:Outdata1-dp-mrcImageHelicalMaskingBy2DImage.png]]<br>
yz-plane<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-69.6051 (45, 44, 59)<br>
353.035 (47, 41, 47)<br>
0.136908<br>
4.30263<br>
0.0062357<br></p>
</td>
</tr>
</table>