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mrcImageInverseRadonTransform - Revision history
2026-06-20T02:07:07Z
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Kinoshita: Created page with "'''mrcImageInverseRadonTransform''' is Eos's Command that performs Inverse Radon Transform. == List of option == === Main option === <table border="1"> <tr>..."
2014-07-25T03:47:35Z
<p>Created page with "'''mrcImageInverseRadonTransform''' is <a href="/Eos/index.php/Eos" title="Eos">Eos</a>'s <a href="/Eos/index.php/Command" title="Command">Command</a> that performs Inverse Radon Transform. == List of option == === Main option === <table border="1"> <tr>..."</p>
<p><b>New page</b></p><div>'''mrcImageInverseRadonTransform''' is [[Eos]]'s [[Command]] that performs Inverse Radon Transform.<br />
<br />
<br />
== List of option ==<br />
=== Main option ===<br />
<table border="1"><br />
<tr> <br />
<th>Option</th> <br />
<th>Essential/Optional</th> <br />
<th>Description</th> <br />
<th>Default</th> <br />
</tr> <br />
<tr> <br />
<td>-i</td> <br />
<td>Essential</td> <br />
<td>Input: [[mrcImage]](Radon)</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-o</td> <br />
<td>Essential</td> <br />
<td>Output: [[mrcImage]]</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-Rmax</td> <br />
<td>Optional</td> <br />
<td>Input: Rmax</td> <br />
<td>1.0</td> <br />
</tr> <br />
<tr> <br />
<td>-Rmin</td> <br />
<td>Optional</td> <br />
<td>Input: Rmin</td> <br />
<td>1.0</td> <br />
</tr> <br />
<tr> <br />
<td>-bpm</td> <br />
<td>Optional</td> <br />
<td>BackProjection Mode</td> <br />
<td>1</td> <br />
</tr> <br />
<tr> <br />
<td>-T</td> <br />
<td>Optional</td> <br />
<td>Threshold</td> <br />
<td>1</td> <br />
</tr> <br />
<tr> <br />
<td>-c</td> <br />
<td>Optional</td> <br />
<td>ConfigurationFile</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-m</td> <br />
<td>Optional</td> <br />
<td>Mode</td> <br />
<td>0</td> <br />
</tr> <br />
<tr> <br />
<td>-h</td> <br />
<td>Optional</td> <br />
<td>Help</td> <br />
<td>γ</td> <br />
</tr> <br />
</table> <br />
<br />
=== -m details ===<br />
<table border="1"><br />
<tr> <br />
<th>Value</th> <br />
<th>Description</th> <br />
</tr> <br />
<tr> <br />
<td>0</td> <br />
<td></td> <br />
</tr> <br />
</table> <br />
<br />
===-bpm details===<br />
<table border="1"><br />
<tr> <br />
<th>Value</th> <br />
<th>Description</th> <br />
</tr> <br />
<tr> <br />
<td>1</td> <br />
<td>SimpleBackProjection</td> <br />
</tr> <br />
<tr> <br />
<td>2</td> <br />
<td>WeightedBackProjection</td> <br />
</tr> <br />
<tr> <br />
<td>3</td> <br />
<td>RWeightedBackProjectioni (-Rmax, -Rmin)</td> <br />
</tr> <br />
<tr> <br />
<td>4</td> <br />
<td>NearestCountRWeightedBackProjection (-Rmax, -Rmin)</td> <br />
</tr> <br />
<tr> <br />
<td>5</td> <br />
<td>WeightedCountRWeightedBackProjection (-Rmax, -Rmin, -T)</td> <br />
</tr> <br />
<tr> <br />
<td>6</td> <br />
<td>SimpleBackProjectionRWeight (-Rmax, -Rmin)</td> <br />
</tr> <br />
</table> <br />
<br />
<br />
== Execution example ==<br />
===[[:Media:Input-121P.radon | Input file]] data===<br />
<table><br />
<tr><br />
<td>[[File:Input-121P-radon.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
solid(Level: 0)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
90<br></p><br />
</td><br />
</tr><br />
</table><br />
<table><br />
<tr><br />
<td><p align="left">Size<br> <br />
γ’γΌγ<br> <br />
Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left"> ( 100, 6, 12)<br><br />
mrcFloatRadonImage <br> <br />
0 (0, 0, 0)<br><br />
548332 (43, 5, 5)<br><br />
110585<br><br />
157847<br><br />
1860.25<br></p><br />
</td><br />
</tr><br />
</table><br />
<br><br />
<br />
<div>[[:Media:Input-121P.mrc | before Radon transform file]]'s data</div><br />
<table> <br />
<tr> <br />
<td>[[File:Input2-121P.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 236)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
0<br></p><br />
</td><br />
</tr><br />
</table><br />
<table> <br />
<tr> <br />
<td>[[File:Input3-121P.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 236)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
90<br></p><br />
</td><br />
</tr><br />
</table><br />
<table><br />
<tr><br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">0 (0, 0, 0)<br> <br />
3500.79 (49, 53, 30)<br> <br />
11.0585<br> <br />
118.123<br> <br />
0.118123<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br><br />
<br />
=== Example of options only essential ===<br />
<table> <br />
<tr> <br />
<td>[[File:Outdata-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 2.57e+07)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
0<br></p><br />
</td><br />
</tr><br />
</table><br />
<table> <br />
<tr> <br />
<td>[[File:Outdata1-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 2.57e+07)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
90<br></p><br />
</td><br />
</tr><br />
</table><br />
<table><br />
<tr><br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">2.70513e+06 (99, 0, 18)<br> <br />
3.08546e+07 (46, 53, 54)<br> <br />
9.04412e+06<br> <br />
4.59295e+06<br> <br />
4592.95<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br><br />
<br />
=== Option -bpm===<br />
====bpm=2==== <br />
<table> <br />
<tr> <br />
<td>[[File:Outdata-bpm2-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 147432)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
0<br></p><br />
</td><br />
</tr><br />
</table><br />
<table> <br />
<tr> <br />
<td>[[File:Outdata1-bpm2-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 147432)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
90<br></p><br />
</td><br />
</tr><br />
</table><br />
<table><br />
<tr><br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">0 (0, 0, 0)<br> <br />
548332 (43, 5, 5)<br> <br />
110585<br> <br />
157847<br> <br />
1860.25<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br><br />
<br />
====Case: bpm=3==== <br />
=====Case: No other settings=====<br />
<table> <br />
<tr> <br />
<td>[[File:Outdata-bpm3-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 11225)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
0<br></p><br />
</td><br />
</tr><br />
</table><br />
<table> <br />
<tr> <br />
<td>[[File:Outdata1-bpm3-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 11225)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
90<br></p><br />
</td><br />
</tr><br />
</table><br />
<table><br />
<tr><br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-25501.4 (58, 57, 50)<br> <br />
25807.4 (33, 56, 47)<br> <br />
18.921<br> <br />
4069.39<br> <br />
4.06939<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br><br />
<br />
=====Case: Rmin=0.1, Rmax=0.5===== <br />
<table> <br />
<tr> <br />
<td>[[File:Outdata-bpm3RminRmax-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 17078)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
0<br></p><br />
</td><br />
</tr><br />
</table><br />
<table> <br />
<tr> <br />
<td>[[File:Outdata1-bpm3RminRmax-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 17078)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
90<br></p><br />
</td><br />
</tr><br />
</table><br />
<table> <br />
<tr> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-35554.3 (41, 46, 60)<br> <br />
42895.3 (43, 63, 56)<br> <br />
71.5918<br> <br />
6441.25<br> <br />
6.44125<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br><br />
<br />
====Case: bpm=4==== <br />
=====Case: No other settings=====<br />
<table> <br />
<tr> <br />
<td>[[File:Outdata-bpm4-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 39203)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
0<br></p><br />
</td><br />
</tr><br />
</table><br />
<table> <br />
<tr> <br />
<td>[[File:Outdata1-bpm4-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 39203)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
90<br></p><br />
</td><br />
</tr><br />
</table><br />
<table><br />
<tr><br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-4.38318e+06 (44, 51, 0) <br> <br />
7.95502e+06 (53, 48, 52)<br> <br />
98305.6<br> <br />
1.27742e+06<br> <br />
1277.42<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br><br />
<br />
=====Case: Rmin=0.1, Rmax=0.5===== <br />
<table> <br />
<tr> <br />
<td>[[File:Outdata-bpm4RminRmax-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 5543168)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
0<br></p><br />
</td><br />
</tr><br />
</table><br />
<table> <br />
<tr> <br />
<td>[[File:Outdata1-bpm4RminRmax-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 5543168)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
90<br></p><br />
</td><br />
</tr><br />
</table><br />
<table> <br />
<tr> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-4.30597e+06 (44, 51, 0)<br> <br />
7.79371e+06 (52, 47, 52)<br> <br />
98305.6<br> <br />
1.27414e+06<br> <br />
1274.14<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br><br />
<br />
====Case: bpm=5==== <br />
=====Case: No other settings=====<br />
<table> <br />
<tr> <br />
<td>[[File:Outdata-bpm5-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 4347459)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
0<br></p><br />
</td><br />
</tr><br />
</table><br />
<table> <br />
<tr> <br />
<td>[[File:Outdata1-bpm5-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 4347459)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
90<br></p><br />
</td><br />
</tr><br />
</table><br />
<table><br />
<tr><br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-2.47747e+06 (44, 51, 0)<br> <br />
6.61758e+06 (50, 56, 55)<br> <br />
119547<br> <br />
875859<br> <br />
875.859<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br><br />
<br />
=====Case: Rmin=0.1, Rmax=0.5===== <br />
<table> <br />
<tr> <br />
<td>[[File:Outdata-bpm5RminRmax-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 4345185)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
0<br></p><br />
</td><br />
</tr><br />
</table><br />
<table> <br />
<tr> <br />
<td>[[File:Outdata1-bpm5RminRmax-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 4345185)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
90<br></p><br />
</td><br />
</tr><br />
</table><br />
<table> <br />
<tr> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-2.40589e+06 (44, 51, 0)<br> <br />
6.43175e+06 (51, 47, 52)<br> <br />
119547<br> <br />
871588<br> <br />
871.588<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br><br />
<br />
=====Case: T=0.5===== <br />
<table> <br />
<tr> <br />
<td>[[File:Outdata-bpm5T-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 2.57e+07)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
0<br></p><br />
</td><br />
</tr><br />
</table><br />
<table> <br />
<tr> <br />
<td>[[File:Outdata1-bpm5T-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 2.57e+07)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
90<br></p><br />
</td><br />
</tr><br />
</table><br />
<table> <br />
<tr> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">2.70513e+06 (99, 0, 18)<br> <br />
3.08546e+07 (46, 53, 54)<br> <br />
9.04412e+06<br> <br />
4.59295e+06<br> <br />
4592.95<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br><br />
<br />
====Case: bpm=6==== <br />
=====Case: No other settings=====<br />
<table> <br />
<tr> <br />
<td>[[File:Outdata-bpm6-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 279548)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
0<br></p><br />
</td><br />
</tr><br />
</table><br />
<table> <br />
<tr> <br />
<td>[[File:Outdata1-bpm6-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 279548)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
90<br></p><br />
</td><br />
</tr><br />
</table><br />
<table> <br />
<tr> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-358661 (39, 64, 0)<br> <br />
596169 (53, 48, 52)<br> <br />
4.82695e-06<br> <br />
80685.1<br> <br />
80.6851<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br><br />
<br />
=====Case: Rmin=0.1, Rmax=0.5===== <br />
<table> <br />
<tr> <br />
<td>[[File:Outdata-bpm6RminRmax-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 253658)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
0<br></p><br />
</td><br />
</tr><br />
</table><br />
<table> <br />
<tr> <br />
<td>[[File:Outdata1-bpm6RminRmax-mrcImageInverseRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 253658)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
90<br></p><br />
</td><br />
</tr><br />
</table><br />
<table> <br />
<tr> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-195434 (41, 45, 1)<br> <br />
477868 (53, 48, 52)<br> <br />
4.01732e-05<br> <br />
66425<br> <br />
66.425<br></p> <br />
</td> <br />
</tr> <br />
</table></div>
Kinoshita