mrcImageLowPassFilter - Revision history

Kinoshita: /* Option -m */

2015-03-04T01:07:31Z

‎Option -m

Kinoshita: /* Execution example */

2015-03-04T01:07:18Z

‎Execution example

Kinoshita at 05:12, 6 August 2014

2014-08-06T05:12:51Z

Kinoshita at 05:00, 6 August 2014

2014-08-06T05:00:23Z

Kinoshita: Created page with "'''mrcImageLowPassFilter''' is Eos's Command that performs High Pass Filter to mrcImage, and smoothing it. == List of option == === Main option ===
2014-07-25T04:39:02Z
Created page with "'''mrcImageLowPassFilter''' is Eos's Command that performs High Pass Filter to mrcImage, and smoothing it. == List of option == === Main option === <table borde..."
New page
'''mrcImageLowPassFilter''' is [[Eos]]'s [[Command]] that performs High Pass Filter to [[mrcImage]], and smoothing it.

== List of option ==
=== Main option ===
<table border="1">
<div align="left">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-hvp</td>
<td>Optional</td>
<td>HalfValuePoint[A-1] (the spatial frequency that the intensity attenuate to half)</td>
<td>1.0</td>
</tr>
<tr>
<td>-w</td>
<td>Optional</td>
<td>Width of cos function of spatial frequency</td>
<td>1.0</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode (need to set ,because 0 is undefined)</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</div>
</table>

=== -m details ===
<table border="1">
<div align="left">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>1</td>
<td>Step filter : required argumnent: -hvp</td>
</tr>
<tr>
<td>2</td>
<td>Cos filter : required argumnent: -hvp -w</td>
</tr>
<tr>
<td>3</td>
<td>Exp filter : required argumnent: -hvp</td>
</tr>

<tr>
<td>4</td>
<td>Gauss filter : required argumnent: -hvp</td>
</tr>
<tr>
<td>5</td>
<td>Lorenz filter : required argumnent: -hvp</td>
</tr>
</div>
</table>

== Execution example ==
=== Input file's image ===
<table>
<tr>
<td>[[File:Input-mrcImageLowPassFilter.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0<br>
255<br>
21.0538<br>
47.6709<br>
0.595886<br></p>
</td>
</tr>
</table>

=== Option -m===
====Case: m=1, hvp=0.03====
<table>
<tr>
<td>[[File:Outdata-m1hvp0.03-mrcImageLowPassFilter.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-13.3126<br>
219.107<br>
21.0538<br>
46.5599<br>
0.581999<br></p>
</td>
</tr>
</table>

====Case: m=2, hvp=0.03, w=0.03====
<table>
<tr>
<td>[[File:Outdata-m2hvp0.03-mrcImageLowPassFilter.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-7.37665<br>
213.947<br>
21.0538<br>
46.0616<br>
0.57577<br></p>
</td>
</tr>
</table>

====Case: m=3, hvp=0.03====
<table>
<tr>
<td>[[File:Outdata-m3hvp0.03-mrcImageLowPassFilter.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">1.13914<br>
183.815<br>
21.0538<br>
39.0991<br>
0.488739<br></p>
</td>
</tr>
</table>

====Case: m=4, hvp=0.03====
<table>
<tr>
<td>[[File:Outdata-m4hvp0.03-mrcImageLowPassFilter.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-1.83105e-05<br>
199.777<br>
21.0538<br>
43.8691<br>
0.548364<br></p>
</td>
</tr>
</table>

====Case: m=5, hvp=0.03====
<table>
<tr>
<td>[[File:Outdata-m5hvp0.03-mrcImageLowPassFilter.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">1.15871e-05<br>
199.081<br>
21.0538<br>
43.1827<br>
0.539784<br></p>
</td>
</tr>
</table>

Example of help by -h

$ mrcImageLowPassFilter -h
Usage: /home/people/tacyas/Eos/bin/X86LINUX64/mrcImageLowPassFilter
Options:
[-i[nput] In (NULL )] :Essential :InputDataFile
[-o[utput] Out (NULL )] :Essential :OutputDataFile
[-c[onfig] configFile (NULL )] :Optional :ConfigurationFile
[-m[ode] mode (0 )] :Optional :Mode
[-h[alf]v[alue]p[oint]hvp (1.0 )] :Optional :HalfValuePoint[/A]
[-w[idth] width (1.0 )] :Optional :WidthOfDumping
>>> Mode <<<<
1: Step filter : required argumnent: -hvp
2: Cos filter : required argumnent: -hvp -w
3: Exp filter : required argumnent: -hvp
4: Gauss filter : required argumnent: -hvp
5: Lorenz filter : required argumnent: -hvp

@@ Line 139: / Line 139: @@
 		</tr>
 	</table>
-The image on Real Space is seen blurry, because its high frequency signal is filtered.
+The image on Real Space is seen blurry, because its high frequency signal is filtered.<br>
 <br>

← Older revision		Revision as of 05:12, 6 August 2014
Line 1:		Line 1:
−	'''mrcImageLowPassFilter''' is [[Eos]]'s [[Command]] that performs Low Pass Filter to [[mrcImage]], and smoothing it.	+	'''mrcImageLowPassFilter''' is [[Eos]]'s [[Command]] that performs [[Low-Pass Filter]] to [[mrcImage]], and smoothing it.

	== List of option ==		== List of option ==

← Older revision		Revision as of 05:00, 6 August 2014
Line 1:		Line 1:
−	'''mrcImageLowPassFilter''' is [[Eos]]'s [[Command]] that performs ~~High~~ Pass Filter to [[mrcImage]], and smoothing it.	+	'''mrcImageLowPassFilter''' is [[Eos]]'s [[Command]] that performs Low Pass Filter to [[mrcImage]], and smoothing it.

	== List of option ==		== List of option ==

@@ Line 89: / Line 89: @@
 == Execution example ==
-=== Input file's image ===
+=== [[:Media:Input-B120.mrc|Input file]]'s image ===
 	<table>
 		<tr>
-			<td>[[File:Input-mrcImageLowPassFilter.png]]</td>
+			<td><p align="center">[[File:Input-B120.png]]<br>
 			<td><p align="left">Min<br>
 				Max<br>
@@ Line 107: / Line 112: @@
 		</tr>
 	</table>
 === Option -m===
-====Case: m=1, hvp=0.03====
+====Case: m=1====
 	<table>
 		<tr>
-			<td>[[File:Outdata-m1hvp0.03-mrcImageLowPassFilter.png]]</td>
+			<td><p align="center">[[File:Outdata-m1hvp0.03-mrcImageLowPassFilter.png]]<br>
 			<td><p align="left">Min<br>
 				Max<br>
@@ Line 127: / Line 139: @@
 		</tr>
 	</table>
-====Case: m=2, hvp=0.03, w=0.03====
+====Case: m=2====
 	<table>
 		<tr>
-			<td>[[File:Outdata-m2hvp0.03-mrcImageLowPassFilter.png]]</td>
+			<td><p align="center">[[File:Outdata-m2hvp0.03-mrcImageLowPassFilter.png]]<br>
 			<td><p align="left">Min<br>
 				Max<br>
@@ Line 146: / Line 166: @@
 		</tr>
 	</table>
-====Case: m=3, hvp=0.03====
+====Case: m=3====
 	<table>
 		<tr>
-			<td>[[File:Outdata-m3hvp0.03-mrcImageLowPassFilter.png]]</td>
+			<td><p align="center">[[File:Outdata-m3hvp0.03-mrcImageLowPassFilter.png]]<br>
 			<td><p align="left">Min<br>
 				Max<br>
@@ Line 165: / Line 192: @@
 		</tr>
 	</table>
-====Case: m=4, hvp=0.03====
+=====Case: hvp=0.01=====
 	<table>
 		<tr>
-			<td>[[File:Outdata-m4hvp0.03-mrcImageLowPassFilter.png]]</td>
+			<td><p align="center">[[File:Outdata-m3hvp0.01-mrcImageLowPassFilter.png]]<br>
 			<td><p align="left">Min<br>
 				Max<br>
@@ Line 184: / Line 243: @@
 		</tr>
 	</table>
-====Case: m=5, hvp=0.03====
+====Case: m=5====
 	<table>
 		<tr>
-			<td>[[File:Outdata-m5hvp0.03-mrcImageLowPassFilter.png]]</td>
+			<td><p align="center">[[File:Outdata-m5hvp0.03-mrcImageLowPassFilter.png]]<br>
 			<td><p align="left">Min<br>
 				Max<br>
@@ Line 203: / Line 269: @@
 		</tr>
 	</table>