http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?action=history&feed=atom&title=mrcImageMakeDump
mrcImageMakeDump - Revision history
2026-05-04T14:19:44Z
Revision history for this page on the wiki
MediaWiki 1.23.6
http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=mrcImageMakeDump&diff=4520&oldid=prev
Kinoshita: /* Main option */
2014-10-20T07:29:44Z
<p><span dir="auto"><span class="autocomment">Main option</span></span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 07:29, 20 October 2014</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <tr>  </div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <tr>  </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td>-o</td>  </div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td>-o</td>  </div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> <td><del class="diffchange diffchange-inline">Essential</del></td>  </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> <td><ins class="diffchange diffchange-inline">Optional</ins></td>  </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td>Output: [[ASCII]]</td>  </div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td>Output: [[ASCII]]</td>  </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td>NULL</td>  </div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td>NULL</td>  </div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td> </td>  </div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td> </td>  </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> </tr>  </div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> </tr>  </div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </table>  </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </table></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>=== -m details ===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>=== -m details ===</div></td></tr>
</table>
Kinoshita
http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=mrcImageMakeDump&diff=1537&oldid=prev
Kinoshita: Created page with "'''mrcImageMakeDump''' is Eos's Command that outputs the pixel data of mrcImage as text. == List of option == === Main option === <table border="1"> <tr>..."
2014-07-25T05:04:07Z
<p>Created page with "'''mrcImageMakeDump''' is <a href="/Eos/index.php/Eos" title="Eos">Eos</a>'s <a href="/Eos/index.php/Command" title="Command">Command</a> that outputs the pixel data of <a href="/Eos/index.php/mrcImage" title="mrcImage">mrcImage</a> as text. == List of option == === Main option === <table border="1"> <tr>..."</p>
<p><b>New page</b></p><div>'''mrcImageMakeDump''' is [[Eos]]'s [[Command]] that outputs the pixel data of [[mrcImage]] as text.<br />
<br />
<br />
== List of option ==<br />
=== Main option ===<br />
<table border="1"><br />
<tr> <br />
<th>Option</th> <br />
<th>Essential/Optional</th> <br />
<th>Description</th> <br />
<th>Default</th> <br />
</tr> <br />
<tr> <br />
<td>-i</td> <br />
<td>Essential</td> <br />
<td>Input: [[mrcImage]]</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-o</td> <br />
<td>Essential</td> <br />
<td>Output: [[ASCII]]</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-c</td> <br />
<td>Optional</td> <br />
<td>ConfigurationFile</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-m</td> <br />
<td>Optional</td> <br />
<td>Mode</td> <br />
<td>0</td> <br />
</tr> <br />
<tr> <br />
<td>-h</td> <br />
<td>Optional</td> <br />
<td>Help</td> <br />
<td> </td> <br />
</tr> <br />
</table> <br />
<br />
=== -m details ===<br />
<table border="1"><br />
<tr> <br />
<th>Value</th> <br />
<th>Description</th> <br />
</tr> <br />
<tr> <br />
<td>0</td> <br />
<td>Repart Impart</td> <br />
</tr> <br />
<tr> <br />
<td>1</td> <br />
<td>Power</td> <br />
</tr> <br />
<tr> <br />
<td>2</td> <br />
<td>Phase</td> <br />
</tr> <br />
<tr> <br />
<td>+4</td> <br />
<td>Dump full space for Power. Default is x>=0 only.</td> <br />
</tr> <br />
<tr> <br />
<td>+8</td> <br />
<td>Dump for table </td> <br />
</tr> <br />
</table> <br />
<br />
<br />
== Execution example ==<br />
===Input file(2D) image===<br />
<table> <br />
<tr> <br />
<td>[[File:Input-mrcImageMakeDump.png]]</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">0 (0, 0, 0)<br> <br />
255 (49, 32, 0)<br> <br />
21.0538<br> <br />
47.6709<br> <br />
0.595886<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br />
<br />
==== Example of options only essential ====<br />
<pre><br />
0 0 0 <br />
1 0 0 <br />
2 0 0 <br />
<br />
...<br />
<br />
32 35 144 <br />
33 35 160 <br />
34 35 181 <br />
35 35 200 <br />
36 35 195 <br />
37 35 163 <br />
38 35 152 <br />
<br />
...<br />
<br />
77 79 0 <br />
78 79 0 <br />
79 79 0 <br />
</pre><br />
<br />
<br />
==== Option -m====<br />
=====Case: m=8===== <br />
<pre><br />
0 0 0 ... 0 0 0 ... 0 0 0 <br />
0 0 0 ... 0 0 0 ... 0 0 0 <br />
0 0 0 ... 0 0 0 ... 0 0 0 <br />
<br />
...<br />
<br />
0 0 0 ... 118 93 93 ... 0 0 0 <br />
0 0 0 ... 116 100 99 ... 0 0 0 <br />
0 0 0 ... 139 133 132 ... 0 0 0 <br />
0 0 0 ... 168 183 185 ... 0 0 0 <br />
0 0 0 ... 190 221 217 ... 0 0 0 <br />
<br />
...<br />
<br />
0 0 0 ... 0 0 0 ... 0 0 0 <br />
0 0 0 ... 0 0 0 ... 0 0 0 <br />
0 0 0 ... 0 0 0 ... 0 0 0 <br />
</pre><br />
<br />
<br />
===Input file(FFT) image===<br />
<table> <br />
<tr> <br />
<td>[[File:Input(FFT)-mrcImageMakeDump.png]]</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">0.00578955 (57, 38, 0)<br> <br />
2254.49 (0, 0, 0)<br> <br />
4.13125<br> <br />
46.4141<br> <br />
0.554755<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br />
<br />
==== Example of options only essential ====<br />
<pre><br />
0 -50 2.46217 0 <br />
1 -50 -0.863062 -0.000813859 <br />
2 -50 1.03804 0.00137449 <br />
3 -50 -1.85087 -0.00148308 <br />
4 -50 0.176098 0.00102104 <br />
5 -50 -1.63637 -3.87552e-07 <br />
<br />
...<br />
<br />
30 49 -1.28969 0.025782 <br />
31 49 -1.01744 0.0629785 <br />
32 49 -0.143397 -0.0623818 <br />
33 49 0.238892 -0.0205756 <br />
34 49 0.801902 0.0770342 <br />
35 49 -1.14275 -0.0585994 <br />
</pre><br />
<br />
<br />
==== Option -m====<br />
=====Case: m=1===== <br />
<pre><br />
0 -50 6.06229 <br />
1 -50 0.744877 <br />
2 -50 1.07754 <br />
3 -50 3.42574 <br />
4 -50 0.0310115 <br />
5 -50 2.67771 <br />
<br />
...<br />
<br />
30 49 1.66398 <br />
31 49 1.03915 <br />
32 49 0.0244542 <br />
33 49 0.0574929 <br />
34 49 0.648981 <br />
35 49 1.30932 <br />
</pre><br />
<br />
=====Case: m=2===== <br />
<pre><br />
0 -50 0 <br />
1 -50 -3.14065 <br />
2 -50 0.00132411 <br />
3 -50 -3.14079 <br />
4 -50 0.00579808 <br />
5 -50 -3.14159 <br />
<br />
...<br />
<br />
30 49 3.1216 <br />
31 49 3.07977 <br />
32 49 -2.73126 <br />
33 49 -0.0859172 <br />
34 49 0.0957705 <br />
35 49 -3.09036 <br />
</pre><br />
<br />
=====Case: m=4===== <br />
<pre><br />
-35 -50 -2.38568 -0 <br />
-34 -50 0.960153 1.30115e-05 <br />
-33 -50 -0.318225 -8.88406e-05 <br />
-32 -50 0.191207 0.000275728 <br />
-31 -50 2.01544 -0.000570286 <br />
-30 -50 -1.58218 0.000924035 <br />
<br />
...<br />
<br />
30 49 -1.28969 0.025782 <br />
31 49 -1.01744 0.0629785 <br />
32 49 -0.143397 -0.0623818 <br />
33 49 0.238892 -0.0205756 <br />
34 49 0.801902 0.0770342 <br />
35 49 -1.14275 -0.0585994 <br />
</pre><br />
<br />
=====Case: m=5===== <br />
<pre><br />
-35 -50 5.69145 <br />
-34 -50 0.921894 <br />
-33 -50 0.101267 <br />
-32 -50 0.0365602 <br />
-31 -50 4.06199 <br />
-30 -50 2.5033 <br />
<br />
...<br />
<br />
30 49 1.66398 <br />
31 49 1.03915 <br />
32 49 0.0244542 <br />
33 49 0.0574929 <br />
34 49 0.648981 <br />
35 49 1.30932 <br />
</pre><br />
<br />
=====Case: m=6===== <br />
<pre><br />
-35 -50 -3.14159 <br />
-34 -50 1.35515e-05 <br />
-33 -50 -3.14131 <br />
-32 -50 0.00144204 <br />
-31 -50 -0.000282959 <br />
-30 -50 3.14101 <br />
<br />
...<br />
<br />
30 49 3.1216 <br />
31 49 3.07977 <br />
32 49 -2.73126 <br />
33 49 -0.0859172 <br />
34 49 0.0957705 <br />
35 49 -3.09036 <br />
</pre></div>
Kinoshita