mrcImageMakeSphere - Revision history

Kinoshita: Created page with "'''mrcImageMakeSphere''' is Eos's Command that makes sphere or circle. == List of option == === Main option === ..."
2014-07-27T23:45:33Z
Created page with "'''mrcImageMakeSphere''' is Eos's Command that makes sphere or circle. == List of option == === Main option === <table border="1"> <tr> <th>Option</th>..."
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'''mrcImageMakeSphere''' is [[Eos]]'s [[Command]] that makes sphere or circle.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]](Template file)</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-C</td>
<td>Optional</td>
<td>Cetnter position of Sphere (Cx, Cy, Cz)</td>
<td>(0, 0, 0)</td>
</tr>
<tr>
<td>-or</td>
<td>Essential</td>
<td>Outer Radius (pixel)</td>
<td>1</td>
</tr>
<tr>
<td>-ir</td>
<td>Optional</td>
<td>Inner Radius (pixel)</td>
<td>0</td>
</tr>
<tr>
<td>-r</td>
<td>Optional</td>
<td>Center Radius (pixel): For mode 1 only.</td>
<td>0</td>
</tr>
<tr>
<td>-v</td>
<td>Optional</td>
<td>Value of sphere</td>
<td>10.0</td>
</tr>
<tr>
<td>-Other</td>
<td>Optional</td>
<td>Other acceptors. For FRET Calculation.</td>
<td>NULL</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>Constant</td>
</tr>
<tr>
<td>1</td>
<td>Gaussian</td>
</tr>
</table>

== Execution example ==
=== Input file's image ===
<table>
<tr>
<td>[[File:Input-mrcImageMakeSphere.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
2 (35, 35, 5)<br>
0.384947<br>
0.605556<br>
0.00086508<br></p>
</td>
</tr>
</table>

=== Example of options only essential ===
====Case: or=30====
<table>
<tr>
<td>[[File:Outdata-mrcImageMakeSphere.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (31, 0, 0)<br>
310 (0, 0, 0)<br>
21.7371<br>
67.4353<br>
0.806006<br></p>
</td>
</tr>
</table>

=== Option -C===
====Case: C=(35, 35, 50), or=30====
<table>
<tr>
<td>[[File:Outdata-C-mrcImageMakeSphere.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
610 (35, 50, 0)<br>
161.544<br>
215.939<br>
2.58096<br></p>
</td>
</tr>
</table>

=== Option -ir===
====Case: ir=15, C=(35, 35, 50), or=30====
<table>
<tr>
<td>[[File:Outdata-ir-mrcImageMakeSphere.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
510 (31, 34, 0)<br>
141.549<br>
185.58<br>
2.21811<br></p>
</td>
</tr>
</table>

=== Option -v===
====Case: v=20, C=(35, 35, 50), or=30====
<table>
<tr>
<td>[[File:Outdata-v-mrcImageMakeSphere.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
1220 (35, 50, 0)<br>
323.089<br>
431.878<br>
5.16193<br></p>
</td>
</tr>
</table>

=== Option -m===
====Case: m=1, C=(35, 35, 50), or=30====
<table>
<tr>
<td>[[File:Outdata-m1-mrcImageMakeSphere.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0.0246775 (0, 0, 0)<br>
503.861 (31, 42, 0)<br>
154.591<br>
170.165<br>
2.03386<br></p>
</td>
</tr>
</table>

=== Option -r===
====Case: r=5, m=1, C=(35, 35, 50), or=30====
<table>
<tr>
<td>[[File:Outdata-m1r-mrcImageMakeSphere.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">2.86426 (0, 0, 0)<br>
495.602 (35, 46, 0)<br>
165.528<br>
140.716<br>
1.68187<br></p>
</td>
</tr>
</table>

Option