mrcImageMasking - Revision history

Kinoshita: Created page with "'''mrcImageMasking''' is Eos's Command that performs masking. == List of option == === Main option ===

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2014-07-28T00:09:58Z

Created page with "'''mrcImageMasking''' is Eos's Command that performs masking. == List of option == === Main option === <table border="1"> <div align="left"> <tr> <th>Op..."

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'''mrcImageMasking''' is [[Eos]]'s [[Command]] that performs masking.

== List of option ==
=== Main option ===
<table border="1">
<div align="left">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-nx</td>
<td>Optional</td>
<td>Size: x</td>
<td>0</td>
</tr>
<tr>
<td>-ny</td>
<td>Optional</td>
<td>Size: y</td>
<td>0</td>
</tr>
<tr>
<td>-nz</td>
<td>Optional</td>
<td>Size: z</td>
<td>0</td>
</tr>
<tr>
<td>-cx</td>
<td>Optional</td>
<td>Center: x</td>
<td>0</td>
</tr>
<tr>
<td>-cy</td>
<td>Optional</td>
<td>Center: y</td>
<td>0</td>
</tr>
<tr>
<td>-cz</td>
<td>Optional</td>
<td>Center: z</td>
<td>0</td>
</tr>
<tr>
<td>-Shape</td>
<td>Optional</td>
<td>Shape</td>
<td>0</td>
</tr>
<tr>
<td>-Normalize</td>
<td>Optional</td>
<td></td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</div>
</table>

===-Shape details===
<table border="1">
<div align="left">
<tr>
<th>Shape</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>Circle : radius(nx, ny, nz)</td>
</tr>
<tr>
<td>1</td>
<td>Square : radius(nx, ny, nz)</td>
</tr>
</div>
</table>

== Execution example ==
===------Input file's image------===
<table>
<tr>
<td>[[File:B120-2-mrcImageMasking.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-65.0178<br>
94.4699<br>
4.85274<br>
20.4635<br>
0.255794<br></p>
</td>
</tr>
</table>
<div>*It doesn't effect -nz,-cz, because the image is 2D image.</div>

===------Example of options only essential------===
<table>
<tr>
<td>[[File:Outdata-mrcImageMasking.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-65.2676<br>
94.2201<br>
4.60291<br>
19.0052<br>
0.237565<br></p>
</td>
</tr>
</table>

===------Option -nx,-ny------===
====Case: nx=50,ny=50====
<table>
<tr>
<td>[[File:Outdata-n50-mrcImageMasking.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-70.9428<br>
47.3741<br>
-1.07227<br>
6.73167<br>
0.0841459<br></p>
</td>
</tr>
</table>

===------Option -cx,-cy------===
====Case: nx=50,ny=50,cx=30,cy=30====
<table>
<tr>
<td>[[File:Outdata-n50c30-mrcImageMasking.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-66.2815<br>
93.2062<br>
3.61881<br>
14.4149<br>
0.180186<br></p>
</td>
</tr>
</table>

===------Option -Shape------===
====Case: nx=50,ny=50,cx=30,cy=30,Shape=1====
<table>
<tr>
<td>[[File:Outdata-n50c30-Shape1-mrcImageMasking.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-65.7765<br>
93.7112<br>
4.09402<br>
15.6837<br>
0.196047<br></p>
</td>
</tr>
</table>