mrcImageMaskingByImage - Revision history

Kinoshita: /* Case: -v＝０ */

2014-07-28T00:31:22Z

‎Case: -v＝０

Kinoshita: /* Case: -v＝１ */

2014-07-28T00:30:54Z

‎Case: -v＝１

Kinoshita: Created page with "'''mrcImageConvolution''' is Eos's Command that performs masking with convolution of 2 mrcImages. == List of option == === Main option === ..."
2014-07-28T00:25:10Z
Created page with "'''mrcImageConvolution''' is Eos's Command that performs masking with convolution of 2 mrcImages. == List of option == === Main option === <table border="1">..."
New page
'''mrcImageConvolution''' is [[Eos]]'s [[Command]] that performs masking with convolution of 2 [[mrcImage]]s.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-M</td>
<td>Optional</td>
<td>Input: [[mrcImage]](Mask file)</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-v</td>
<td>Optional</td>
<td>ValueForCut: [[Real]]</td>
<td>0</td>
</tr> <tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-I</td>
<td>Optional</td>
<td>Input: Array</td>
<td>stdin</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>cut off values larger that CutValue.</td>
</tr>
<tr>
<td>1</td>
<td>cut off values smaller that CutValue.</td>
</tr>
<tr>
<td>2</td>
<td>multiplying mask image: equal to [[mrcImageMultiplyingbyFile]]</td>
</tr>
<tr>
<td>+16</td>
<td>Subtract the average of ROI from the density (with Floating)</td>
</tr>

</table>

== Execution example ==
===------Input file's image------===
<table>
<tr>
<td>[[File:B120-2-mrcImageMaskingByImage.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-65.0178<br>
94.4699<br>
4.85274<br>
20.4635<br>
0.255794<br></p>
</td>
</tr>
</table>

===------Mask file's image------===
<table>
<tr>
<td>[[File:Mask-mrcImageMaskingByImage.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0<br>
1<br>
0.345156<br>
0.475419<br>
0.00594274<br></p>
</td>
</tr>
</table>

===------Option -m------===
====Case: m=0====
=====Case: -v＝０=====
<table>
<tr>
<td>[[File:Outdata-mrcImageMaskingByImage.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-65.0178<br>
55.7056<br>
-0.491187<br>
13.2508<br>
0.165635<br></p>
</td>
</tr>
</table>

=====Case: -v＝１=====
<table>
<tr>
<td>[[File:Outdata-m0v1-mrcImageMaskingByImage.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-65.0178<br>
94.4699<br>
4.85274<br>
20.4635<br>
0.255794<br></p>
</td>
</tr>
</table>
<div>※マスクファイルの画像の最大値が１なので、マスク処理が行われない</div>

====Case: m=1====
=====Case: -v＝０=====
<table>
<tr>
<td>[[File:Outdata-m1-mrcImageMaskingByImage.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-65.0178<br>
94.4699<br>
4.85274<br>
20.4635<br>
0.255794<br></p>
</td>
</tr>
</table>
<div>※マスクファイルの画像の最小値が０なので、マスク処理が行われない</div>

=====Case: -v＝１=====
<table>
<tr>
<td>[[File:Outdata-m1v1-mrcImageMaskingByImage.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-45.4312<br>
94.4699<br>
5.34393<br>
15.4248<br>
0.192809<br></p>
</td>
</tr>
</table>

====Case: m=2====
=====Case: -v＝０=====
<table>
<tr>
<td>[[File:Outdata-m2-mrcImageMaskingByImage.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-45.4312<br>
94.4699<br>
5.34393<br>
15.4248<br>
0.192809<br></p>
</td>
</tr>
</table>